Strain Fitness in Pseudomonas simiae WCS417 around PS417_00250

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00245 and PS417_00250 overlap by 4 nucleotidesPS417_00250 and PS417_00255 are separated by 35 nucleotidesPS417_00255 and PS417_00260 are separated by 194 nucleotides PS417_00245: PS417_00245 - oligopeptidase A, at 47,179 to 49,230 _00245 PS417_00250: PS417_00250 - DNA-binding protein, at 49,227 to 49,502 _00250 PS417_00255: PS417_00255 - hypothetical protein, at 49,538 to 49,741 _00255 PS417_00260: PS417_00260 - gluconate 2-dehydrogenase, at 49,936 to 50,688 _00260 Position (kb) 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1at 48.251 kb on - strand, within PS417_00245at 48.251 kb on - strand, within PS417_00245at 48.251 kb on - strand, within PS417_00245at 48.269 kb on + strand, within PS417_00245at 48.305 kb on - strand, within PS417_00245at 48.416 kb on - strand, within PS417_00245at 48.693 kb on + strand, within PS417_00245at 48.949 kb on + strand, within PS417_00245at 48.950 kb on - strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.009 kb on + strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.010 kb on - strand, within PS417_00245at 49.015 kb on + strand, within PS417_00245at 49.016 kb on - strand, within PS417_00245at 49.016 kb on - strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strandat 49.017 kb on + strand, within PS417_00245at 49.017 kb on + strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.018 kb on - strand, within PS417_00245at 49.247 kb on + strandat 49.250 kb on + strandat 49.500 kb on + strandat 49.539 kb on + strandat 49.540 kb on - strandat 49.540 kb on - strandat 49.800 kb on + strandat 49.839 kb on + strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.840 kb on - strandat 49.891 kb on + strandat 49.892 kb on - strandat 49.892 kb on - strandat 50.104 kb on + strand, within PS417_00260at 50.104 kb on + strand, within PS417_00260at 50.105 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260at 50.219 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260at 50.436 kb on - strand, within PS417_00260

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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48,251 - PS417_00245 0.52 -1.2
48,251 - PS417_00245 0.52 +0.8
48,251 - PS417_00245 0.52 -2.8
48,269 + PS417_00245 0.53 +0.1
48,305 - PS417_00245 0.55 -0.1
48,416 - PS417_00245 0.60 -2.4
48,693 + PS417_00245 0.74 +1.5
48,949 + PS417_00245 0.86 -0.9
48,950 - PS417_00245 0.86 -0.7
49,009 + PS417_00245 0.89 -0.7
49,009 + PS417_00245 0.89 -0.8
49,009 + PS417_00245 0.89 -0.1
49,010 - PS417_00245 0.89 -0.2
49,010 - PS417_00245 0.89 -0.9
49,010 - PS417_00245 0.89 +0.3
49,010 - PS417_00245 0.89 -0.5
49,015 + PS417_00245 0.89 +1.3
49,016 - PS417_00245 0.90 +0.2
49,016 - PS417_00245 0.90 -1.1
49,017 + PS417_00245 0.90 -0.5
49,017 + PS417_00245 0.90 -0.3
49,017 + PS417_00245 0.90 +0.1
49,017 + PS417_00245 0.90 -1.4
49,017 + PS417_00245 0.90 -0.8
49,017 + PS417_00245 0.90 -1.2
49,017 + +1.6
49,017 + PS417_00245 0.90 -1.0
49,017 + PS417_00245 0.90 -0.6
49,018 - PS417_00245 0.90 +0.7
49,018 - PS417_00245 0.90 -1.4
49,018 - PS417_00245 0.90 -0.0
49,018 - PS417_00245 0.90 -0.3
49,018 - PS417_00245 0.90 -0.2
49,247 + -0.4
49,250 + -0.2
49,500 + -0.1
49,539 + +0.6
49,540 - -1.4
49,540 - -1.7
49,800 + -1.7
49,839 + -0.9
49,840 - -0.4
49,840 - -0.4
49,840 - -0.9
49,891 + -0.3
49,892 - +0.3
49,892 - -0.6
50,104 + PS417_00260 0.22 -0.0
50,104 + PS417_00260 0.22 -1.1
50,105 - PS417_00260 0.22 -0.4
50,219 - PS417_00260 0.38 -1.2
50,219 - PS417_00260 0.38 -2.9
50,436 - PS417_00260 0.66 +0.3
50,436 - PS417_00260 0.66 -0.7
50,436 - PS417_00260 0.66 -0.3
50,436 - PS417_00260 0.66 -0.5
50,436 - PS417_00260 0.66 -0.4
50,436 - PS417_00260 0.66 -0.6
50,436 - PS417_00260 0.66 -0.4

Or see this region's nucleotide sequence