Strain Fitness in Pseudomonas simiae WCS417 around PS417_20560

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_20555 and PS417_20560 are separated by 107 nucleotidesPS417_20560 and PS417_20565 overlap by 7 nucleotidesPS417_20565 and PS417_20570 are separated by 17 nucleotides PS417_20555: PS417_20555 - hypothetical protein, at 4,463,354 to 4,464,676 _20555 PS417_20560: PS417_20560 - transmembrane anti-sigma factor, at 4,464,784 to 4,465,029 _20560 PS417_20565: PS417_20565 - RNA polymerase subunit sigma-24, at 4,465,023 to 4,465,637 _20565 PS417_20570: PS417_20570 - 3-oxoacyl-ACP synthase, at 4,465,655 to 4,466,776 _20570 Position (kb) 4464 4465 4466Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4463.852 kb on + strand, within PS417_20555at 4463.852 kb on + strand, within PS417_20555at 4463.853 kb on - strand, within PS417_20555at 4464.017 kb on + strand, within PS417_20555at 4464.017 kb on + strand, within PS417_20555at 4464.018 kb on - strand, within PS417_20555at 4464.024 kb on - strand, within PS417_20555at 4464.068 kb on + strand, within PS417_20555at 4464.068 kb on + strand, within PS417_20555at 4464.069 kb on - strand, within PS417_20555at 4464.069 kb on - strand, within PS417_20555at 4464.203 kb on + strandat 4464.296 kb on + strand, within PS417_20555at 4464.296 kb on + strand, within PS417_20555at 4464.297 kb on - strand, within PS417_20555at 4464.297 kb on - strand, within PS417_20555at 4464.297 kb on - strand, within PS417_20555at 4464.350 kb on + strand, within PS417_20555at 4464.359 kb on + strand, within PS417_20555at 4464.469 kb on + strand, within PS417_20555at 4464.469 kb on + strand, within PS417_20555at 4464.469 kb on + strand, within PS417_20555at 4464.470 kb on - strand, within PS417_20555at 4464.470 kb on - strand, within PS417_20555at 4464.535 kb on + strand, within PS417_20555at 4464.587 kb on + strandat 4464.587 kb on + strandat 4464.674 kb on + strandat 4464.786 kb on - strandat 4464.989 kb on + strand, within PS417_20560at 4464.990 kb on - strand, within PS417_20560at 4465.127 kb on + strand, within PS417_20565at 4465.128 kb on - strand, within PS417_20565at 4465.208 kb on + strand, within PS417_20565at 4465.208 kb on + strand, within PS417_20565at 4465.209 kb on - strand, within PS417_20565at 4465.209 kb on - strand, within PS417_20565at 4465.209 kb on - strand, within PS417_20565at 4465.209 kb on - strandat 4465.209 kb on - strand, within PS417_20565at 4465.385 kb on - strand, within PS417_20565at 4465.385 kb on - strand, within PS417_20565at 4465.529 kb on - strand, within PS417_20565at 4465.529 kb on - strand, within PS417_20565at 4465.555 kb on + strand, within PS417_20565at 4465.556 kb on - strand, within PS417_20565at 4465.556 kb on - strand, within PS417_20565at 4465.746 kb on + strandat 4465.747 kb on - strandat 4465.783 kb on + strand, within PS417_20570at 4465.791 kb on + strand, within PS417_20570at 4465.792 kb on - strand, within PS417_20570at 4465.792 kb on - strand, within PS417_20570at 4465.792 kb on - strand, within PS417_20570at 4465.792 kb on - strand, within PS417_20570at 4465.792 kb on - strand, within PS417_20570at 4465.792 kb on - strand, within PS417_20570at 4465.795 kb on + strand, within PS417_20570at 4465.796 kb on - strand, within PS417_20570

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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4,463,852 + PS417_20555 0.38 +0.5
4,463,852 + PS417_20555 0.38 -0.2
4,463,853 - PS417_20555 0.38 +1.3
4,464,017 + PS417_20555 0.50 +0.6
4,464,017 + PS417_20555 0.50 -0.5
4,464,018 - PS417_20555 0.50 -1.5
4,464,024 - PS417_20555 0.51 -1.5
4,464,068 + PS417_20555 0.54 -0.3
4,464,068 + PS417_20555 0.54 +1.5
4,464,069 - PS417_20555 0.54 +0.5
4,464,069 - PS417_20555 0.54 -1.1
4,464,203 + +2.3
4,464,296 + PS417_20555 0.71 -1.6
4,464,296 + PS417_20555 0.71 +0.3
4,464,297 - PS417_20555 0.71 +1.0
4,464,297 - PS417_20555 0.71 +0.3
4,464,297 - PS417_20555 0.71 +0.1
4,464,350 + PS417_20555 0.75 +0.7
4,464,359 + PS417_20555 0.76 -0.1
4,464,469 + PS417_20555 0.84 -0.4
4,464,469 + PS417_20555 0.84 +0.1
4,464,469 + PS417_20555 0.84 +1.1
4,464,470 - PS417_20555 0.84 -0.3
4,464,470 - PS417_20555 0.84 -0.6
4,464,535 + PS417_20555 0.89 -1.1
4,464,587 + +0.0
4,464,587 + -0.0
4,464,674 + -0.5
4,464,786 - +0.1
4,464,989 + PS417_20560 0.83 +1.7
4,464,990 - PS417_20560 0.84 +1.2
4,465,127 + PS417_20565 0.17 +0.1
4,465,128 - PS417_20565 0.17 -1.0
4,465,208 + PS417_20565 0.30 -0.4
4,465,208 + PS417_20565 0.30 -3.9
4,465,209 - PS417_20565 0.30 +3.1
4,465,209 - PS417_20565 0.30 +0.3
4,465,209 - PS417_20565 0.30 +2.2
4,465,209 - +0.1
4,465,209 - PS417_20565 0.30 -0.5
4,465,385 - PS417_20565 0.59 -0.2
4,465,385 - PS417_20565 0.59 -0.5
4,465,529 - PS417_20565 0.82 -0.7
4,465,529 - PS417_20565 0.82 -0.3
4,465,555 + PS417_20565 0.87 +1.0
4,465,556 - PS417_20565 0.87 -0.9
4,465,556 - PS417_20565 0.87 -1.3
4,465,746 + -0.4
4,465,747 - -0.3
4,465,783 + PS417_20570 0.11 +1.0
4,465,791 + PS417_20570 0.12 -0.4
4,465,792 - PS417_20570 0.12 -1.8
4,465,792 - PS417_20570 0.12 -1.0
4,465,792 - PS417_20570 0.12 -1.3
4,465,792 - PS417_20570 0.12 +1.0
4,465,792 - PS417_20570 0.12 +1.7
4,465,792 - PS417_20570 0.12 -1.7
4,465,795 + PS417_20570 0.12 -2.1
4,465,796 - PS417_20570 0.13 -0.4

Or see this region's nucleotide sequence