Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19600 and PS417_19605 are separated by 187 nucleotides PS417_19605 and PS417_19610 are separated by 65 nucleotides PS417_19610 and PS417_19615 are separated by 39 nucleotides
PS417_19600: PS417_19600 - exonuclease, at 4,264,033 to 4,264,575
_19600
PS417_19605: PS417_19605 - hypothetical protein, at 4,264,763 to 4,265,047
_19605
PS417_19610: PS417_19610 - molybdenum cofactor sulfurase, at 4,265,113 to 4,265,919
_19610
PS417_19615: PS417_19615 - chemotaxis protein CheW, at 4,265,959 to 4,266,894
_19615
Position (kb) 4265
4266 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 4264.339 kb on + strand, within PS417_19600 at 4264.340 kb on - strand, within PS417_19600 at 4264.573 kb on + strand at 4264.599 kb on - strand at 4264.625 kb on - strand at 4264.625 kb on - strand at 4264.631 kb on - strand at 4264.725 kb on - strand at 4264.729 kb on + strand at 4264.729 kb on + strand at 4264.730 kb on - strand at 4264.730 kb on - strand at 4264.782 kb on - strand at 4264.782 kb on - strand at 4264.782 kb on - strand at 4264.862 kb on + strand, within PS417_19605 at 4264.863 kb on - strand, within PS417_19605 at 4265.025 kb on - strand at 4265.115 kb on - strand at 4265.211 kb on - strand, within PS417_19610 at 4265.863 kb on + strand at 4265.897 kb on + strand at 4265.898 kb on - strand at 4265.954 kb on + strand at 4266.107 kb on + strand, within PS417_19615 at 4266.107 kb on + strand, within PS417_19615 at 4266.107 kb on + strand at 4266.107 kb on + strand, within PS417_19615 at 4266.107 kb on + strand, within PS417_19615 at 4266.108 kb on - strand, within PS417_19615 at 4266.108 kb on - strand, within PS417_19615 at 4266.108 kb on - strand, within PS417_19615 at 4266.500 kb on + strand, within PS417_19615 at 4266.500 kb on + strand, within PS417_19615 at 4266.501 kb on - strand, within PS417_19615 at 4266.606 kb on - strand, within PS417_19615 at 4266.619 kb on - strand, within PS417_19615 at 4266.871 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,264,339 + PS417_19600 0.56 +0.9 4,264,340 - PS417_19600 0.57 +0.3 4,264,573 + -0.9 4,264,599 - +1.7 4,264,625 - -2.4 4,264,625 - -0.2 4,264,631 - -0.3 4,264,725 - -0.8 4,264,729 + -0.3 4,264,729 + -1.0 4,264,730 - +0.2 4,264,730 - +1.7 4,264,782 - -0.3 4,264,782 - -1.9 4,264,782 - -0.2 4,264,862 + PS417_19605 0.35 +5.1 4,264,863 - PS417_19605 0.35 -1.2 4,265,025 - -1.7 4,265,115 - +0.6 4,265,211 - PS417_19610 0.12 +1.4 4,265,863 + +2.0 4,265,897 + +0.7 4,265,898 - -0.7 4,265,954 + -0.2 4,266,107 + PS417_19615 0.16 -0.9 4,266,107 + PS417_19615 0.16 -1.2 4,266,107 + -0.9 4,266,107 + PS417_19615 0.16 -1.0 4,266,107 + PS417_19615 0.16 -0.3 4,266,108 - PS417_19615 0.16 +0.7 4,266,108 - PS417_19615 0.16 +0.3 4,266,108 - PS417_19615 0.16 -0.4 4,266,500 + PS417_19615 0.58 -1.2 4,266,500 + PS417_19615 0.58 +2.0 4,266,501 - PS417_19615 0.58 -0.7 4,266,606 - PS417_19615 0.69 +0.7 4,266,619 - PS417_19615 0.71 -0.3 4,266,871 + +1.1
Or see this region's nucleotide sequence