Strain Fitness in Pseudomonas simiae WCS417 around PS417_04435

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_04430 and PS417_04435 are separated by 2 nucleotidesPS417_04435 and PS417_04440 are separated by 164 nucleotidesPS417_04440 and PS417_04445 are separated by 3 nucleotides PS417_04430: PS417_04430 - uracil transporter, at 984,521 to 985,795 _04430 PS417_04435: PS417_04435 - uracil phosphoribosyltransferase, at 985,798 to 986,436 _04435 PS417_04440: PS417_04440 - hypoxanthine-guanine phosphoribosyltransferase, at 986,601 to 987,158 _04440 PS417_04445: PS417_04445 - cupin, at 987,162 to 987,629 _04445 Position (kb) 985 986 987Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 984.842 kb on - strand, within PS417_04430at 984.900 kb on + strand, within PS417_04430at 984.900 kb on + strand, within PS417_04430at 984.900 kb on + strand, within PS417_04430at 984.939 kb on + strand, within PS417_04430at 984.940 kb on - strand, within PS417_04430at 984.940 kb on - strandat 985.210 kb on - strand, within PS417_04430at 985.381 kb on + strand, within PS417_04430at 985.420 kb on + strand, within PS417_04430at 985.420 kb on + strand, within PS417_04430at 985.421 kb on - strand, within PS417_04430at 985.504 kb on + strand, within PS417_04430at 985.504 kb on + strand, within PS417_04430at 985.505 kb on - strand, within PS417_04430at 985.505 kb on - strand, within PS417_04430at 985.506 kb on + strand, within PS417_04430at 985.506 kb on + strand, within PS417_04430at 985.506 kb on + strand, within PS417_04430at 985.507 kb on - strand, within PS417_04430at 985.507 kb on - strand, within PS417_04430at 985.862 kb on + strand, within PS417_04435at 985.862 kb on + strand, within PS417_04435at 985.862 kb on + strand, within PS417_04435at 985.863 kb on - strand, within PS417_04435at 985.901 kb on + strand, within PS417_04435at 985.939 kb on + strand, within PS417_04435at 985.940 kb on - strand, within PS417_04435at 986.099 kb on + strand, within PS417_04435at 986.099 kb on + strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.100 kb on - strand, within PS417_04435at 986.176 kb on + strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.177 kb on - strand, within PS417_04435at 986.233 kb on - strand, within PS417_04435at 986.283 kb on - strand, within PS417_04435at 986.315 kb on + strand, within PS417_04435at 986.316 kb on - strand, within PS417_04435at 986.316 kb on - strand, within PS417_04435at 986.367 kb on + strand, within PS417_04435at 986.368 kb on - strand, within PS417_04435at 986.385 kb on + strandat 986.386 kb on - strandat 986.477 kb on + strandat 986.478 kb on - strandat 986.500 kb on + strandat 986.500 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.502 kb on + strandat 986.503 kb on - strandat 986.510 kb on + strandat 986.510 kb on + strandat 986.511 kb on - strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.513 kb on + strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.514 kb on - strandat 986.555 kb on + strandat 986.555 kb on + strandat 986.655 kb on + strandat 986.814 kb on + strand, within PS417_04440at 987.055 kb on - strand, within PS417_04440at 987.055 kb on - strand, within PS417_04440at 987.105 kb on + strandat 987.114 kb on + strandat 987.138 kb on + strandat 987.156 kb on + strandat 987.156 kb on + strandat 987.156 kb on + strandat 987.157 kb on - strandat 987.157 kb on - strandat 987.303 kb on + strand, within PS417_04445at 987.303 kb on + strand, within PS417_04445at 987.303 kb on + strand, within PS417_04445at 987.303 kb on + strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445at 987.304 kb on - strand, within PS417_04445

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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984,842 - PS417_04430 0.25 +1.4
984,900 + PS417_04430 0.30 -1.3
984,900 + PS417_04430 0.30 +0.1
984,900 + PS417_04430 0.30 -2.1
984,939 + PS417_04430 0.33 -1.3
984,940 - PS417_04430 0.33 -0.1
984,940 - +1.4
985,210 - PS417_04430 0.54 -0.8
985,381 + PS417_04430 0.67 -1.1
985,420 + PS417_04430 0.71 +0.4
985,420 + PS417_04430 0.71 -2.8
985,421 - PS417_04430 0.71 -1.0
985,504 + PS417_04430 0.77 -0.8
985,504 + PS417_04430 0.77 +0.4
985,505 - PS417_04430 0.77 -0.5
985,505 - PS417_04430 0.77 -0.3
985,506 + PS417_04430 0.77 -0.2
985,506 + PS417_04430 0.77 -1.2
985,506 + PS417_04430 0.77 +0.1
985,507 - PS417_04430 0.77 -0.6
985,507 - PS417_04430 0.77 +0.8
985,862 + PS417_04435 0.10 -1.8
985,862 + PS417_04435 0.10 -1.5
985,862 + PS417_04435 0.10 -1.1
985,863 - PS417_04435 0.10 -0.8
985,901 + PS417_04435 0.16 -0.6
985,939 + PS417_04435 0.22 -0.2
985,940 - PS417_04435 0.22 -1.5
986,099 + PS417_04435 0.47 -1.8
986,099 + PS417_04435 0.47 -1.0
986,100 - PS417_04435 0.47 -1.0
986,100 - PS417_04435 0.47 -1.7
986,100 - PS417_04435 0.47 -3.5
986,100 - PS417_04435 0.47 -2.6
986,176 + PS417_04435 0.59 -0.4
986,177 - PS417_04435 0.59 -2.5
986,177 - PS417_04435 0.59 +1.4
986,177 - PS417_04435 0.59 +1.4
986,233 - PS417_04435 0.68 -2.6
986,283 - PS417_04435 0.76 -1.8
986,315 + PS417_04435 0.81 -0.4
986,316 - PS417_04435 0.81 -1.7
986,316 - PS417_04435 0.81 -1.0
986,367 + PS417_04435 0.89 -1.0
986,368 - PS417_04435 0.89 -0.2
986,385 + -0.2
986,386 - -0.6
986,477 + -1.6
986,478 - -0.2
986,500 + -2.6
986,500 + -0.6
986,502 + -0.5
986,502 + -0.9
986,502 + -1.3
986,502 + -1.2
986,502 + -0.3
986,502 + -0.5
986,503 - +0.4
986,510 + -1.0
986,510 + +0.2
986,511 - +0.8
986,513 + -0.8
986,513 + -0.1
986,513 + -0.5
986,513 + -1.0
986,514 - -0.1
986,514 - +0.1
986,514 - +2.4
986,514 - -0.6
986,555 + -0.6
986,555 + -0.1
986,655 + -1.0
986,814 + PS417_04440 0.38 -2.9
987,055 - PS417_04440 0.81 +1.2
987,055 - PS417_04440 0.81 +1.5
987,105 + -1.5
987,114 + -0.3
987,138 + -1.0
987,156 + -2.9
987,156 + -0.4
987,156 + +1.2
987,157 - -2.6
987,157 - +1.4
987,303 + PS417_04445 0.30 -1.0
987,303 + PS417_04445 0.30 +0.4
987,303 + PS417_04445 0.30 -0.3
987,303 + PS417_04445 0.30 -0.5
987,304 - PS417_04445 0.30 -0.2
987,304 - PS417_04445 0.30 -1.2
987,304 - PS417_04445 0.30 +0.6
987,304 - PS417_04445 0.30 +0.4

Or see this region's nucleotide sequence