Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04330 and PS417_04335 are separated by 2 nucleotides PS417_04335 and PS417_04340 are separated by 10 nucleotides PS417_04340 and PS417_04345 are separated by 75 nucleotides
PS417_04330: PS417_04330 - glmZ(sRNA)-inactivating NTPase, at 969,341 to 970,198
_04330
PS417_04335: PS417_04335 - PTS fructose transporter subunit IIA, at 970,201 to 970,665
_04335
PS417_04340: PS417_04340 - ribosome hibernation promoting factor HPF, at 970,676 to 970,981
_04340
PS417_04345: PS417_04345 - RNA polymerase factor sigma-54, at 971,057 to 972,550
_04345
Position (kb) 970
971 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.771 kb on - strand, within PS417_04340 at 970.927 kb on - strand, within PS417_04340 at 970.953 kb on - strand at 970.953 kb on - strand at 970.953 kb on - strand at 970.982 kb on - strand at 970.982 kb on - strand at 971.021 kb on - strand at 971.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 970,771 - PS417_04340 0.31 -3.0 970,771 - PS417_04340 0.31 -0.6 970,771 - PS417_04340 0.31 -0.2 970,771 - PS417_04340 0.31 -1.6 970,771 - PS417_04340 0.31 +1.6 970,771 - PS417_04340 0.31 -2.0 970,771 - PS417_04340 0.31 -0.3 970,771 - PS417_04340 0.31 -1.0 970,771 - PS417_04340 0.31 +1.4 970,771 - PS417_04340 0.31 -1.6 970,927 - PS417_04340 0.82 -1.2 970,953 - -1.7 970,953 - +0.4 970,953 - -0.9 970,982 - +1.4 970,982 - -1.3 971,021 - +1.4 971,027 - -2.0
Or see this region's nucleotide sequence