Strain Fitness in Pseudomonas simiae WCS417 around PS417_00300

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00295 and PS417_00300 are separated by 367 nucleotidesPS417_00300 and PS417_00305 are separated by 58 nucleotides PS417_00295: PS417_00295 - hypothetical protein, at 58,091 to 58,738 _00295 PS417_00300: PS417_00300 - cytochrome B559 subunit alpha, at 59,106 to 60,233 _00300 PS417_00305: PS417_00305 - cytochrome oxidase subunit I, at 60,292 to 61,878 _00305 Position (kb) 59 60 61Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 58.256 kb on + strand, within PS417_00295at 58.364 kb on - strand, within PS417_00295at 58.365 kb on + strand, within PS417_00295at 58.365 kb on + strand, within PS417_00295at 58.366 kb on - strand, within PS417_00295at 58.366 kb on - strand, within PS417_00295at 58.404 kb on + strand, within PS417_00295at 58.405 kb on - strand, within PS417_00295at 58.405 kb on - strand, within PS417_00295at 58.573 kb on - strand, within PS417_00295at 58.761 kb on + strandat 58.762 kb on - strandat 58.783 kb on + strandat 58.784 kb on - strandat 58.784 kb on - strandat 58.792 kb on + strandat 58.794 kb on + strandat 58.794 kb on + strandat 58.794 kb on + strandat 58.794 kb on + strandat 58.875 kb on + strandat 58.962 kb on + strandat 58.985 kb on - strandat 59.030 kb on + strandat 59.031 kb on - strandat 59.038 kb on - strandat 59.187 kb on - strandat 59.439 kb on + strand, within PS417_00300at 59.439 kb on + strand, within PS417_00300at 59.440 kb on - strand, within PS417_00300at 59.499 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.505 kb on + strand, within PS417_00300at 59.589 kb on + strand, within PS417_00300at 59.589 kb on + strand, within PS417_00300at 59.590 kb on - strand, within PS417_00300at 59.590 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.764 kb on - strand, within PS417_00300at 59.904 kb on - strand, within PS417_00300at 59.949 kb on + strand, within PS417_00300at 59.949 kb on + strand, within PS417_00300at 59.950 kb on - strand, within PS417_00300at 60.147 kb on + strandat 60.147 kb on + strandat 60.194 kb on + strandat 60.236 kb on + strandat 60.237 kb on - strandat 60.400 kb on + strandat 60.730 kb on + strand, within PS417_00305at 60.731 kb on - strand, within PS417_00305at 60.731 kb on - strand, within PS417_00305at 60.751 kb on + strand, within PS417_00305at 60.751 kb on + strand, within PS417_00305at 60.752 kb on - strand, within PS417_00305at 60.752 kb on - strand, within PS417_00305at 61.069 kb on + strand, within PS417_00305at 61.069 kb on + strand, within PS417_00305at 61.069 kb on + strand, within PS417_00305at 61.070 kb on - strand, within PS417_00305at 61.070 kb on - strand, within PS417_00305at 61.070 kb on - strand, within PS417_00305

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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58,256 + PS417_00295 0.25 -0.0
58,364 - PS417_00295 0.42 -0.8
58,365 + PS417_00295 0.42 -0.1
58,365 + PS417_00295 0.42 +0.5
58,366 - PS417_00295 0.42 -0.7
58,366 - PS417_00295 0.42 -0.5
58,404 + PS417_00295 0.48 +1.6
58,405 - PS417_00295 0.48 -1.3
58,405 - PS417_00295 0.48 -2.1
58,573 - PS417_00295 0.74 -2.1
58,761 + -0.4
58,762 - -1.1
58,783 + -0.2
58,784 - -2.1
58,784 - -0.5
58,792 + -0.3
58,794 + -0.3
58,794 + +0.2
58,794 + +0.1
58,794 + +0.6
58,875 + -1.3
58,962 + +0.4
58,985 - -0.0
59,030 + -1.1
59,031 - -2.4
59,038 - -0.3
59,187 - -1.1
59,439 + PS417_00300 0.30 -1.5
59,439 + PS417_00300 0.30 +0.0
59,440 - PS417_00300 0.30 +1.1
59,499 + PS417_00300 0.35 -1.0
59,505 + PS417_00300 0.35 -0.3
59,505 + PS417_00300 0.35 -1.1
59,505 + PS417_00300 0.35 -0.5
59,589 + PS417_00300 0.43 +0.3
59,589 + PS417_00300 0.43 -0.7
59,590 - PS417_00300 0.43 -0.3
59,590 - PS417_00300 0.43 -0.7
59,764 - PS417_00300 0.58 -2.0
59,764 - PS417_00300 0.58 -0.8
59,764 - PS417_00300 0.58 -1.9
59,764 - PS417_00300 0.58 +0.8
59,904 - PS417_00300 0.71 -2.5
59,949 + PS417_00300 0.75 -0.6
59,949 + PS417_00300 0.75 -1.0
59,950 - PS417_00300 0.75 -1.8
60,147 + +1.3
60,147 + -0.6
60,194 + -1.8
60,236 + +0.5
60,237 - -0.6
60,400 + -0.3
60,730 + PS417_00305 0.28 +1.3
60,731 - PS417_00305 0.28 -0.5
60,731 - PS417_00305 0.28 -0.6
60,751 + PS417_00305 0.29 +0.6
60,751 + PS417_00305 0.29 +0.7
60,752 - PS417_00305 0.29 -1.6
60,752 - PS417_00305 0.29 -1.8
61,069 + PS417_00305 0.49 +4.3
61,069 + PS417_00305 0.49 -0.7
61,069 + PS417_00305 0.49 -0.5
61,070 - PS417_00305 0.49 +0.4
61,070 - PS417_00305 0.49 -0.7
61,070 - PS417_00305 0.49 -0.5

Or see this region's nucleotide sequence