Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02880 and PS417_02885 are separated by 47 nucleotides PS417_02885 and PS417_02890 are separated by 262 nucleotides PS417_02890 and PS417_02895 overlap by 4 nucleotides
PS417_02880: PS417_02880 - copper chaperone, at 658,663 to 659,145
_02880
PS417_02885: PS417_02885 - hypothetical protein, at 659,193 to 659,588
_02885
PS417_02890: PS417_02890 - cobalt-precorrin-6X reductase, at 659,851 to 660,570
_02890
PS417_02895: PS417_02895 - precorrin-6Y C5,15-methyltransferase, at 660,567 to 661,772
_02895
Position (kb) 659
660
661 Strain fitness (log2 ratio) -2
-1
0
1
2 at 658.877 kb on - strand, within PS417_02880 at 659.076 kb on - strand, within PS417_02880 at 659.285 kb on + strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.303 kb on - strand, within PS417_02885 at 659.470 kb on - strand, within PS417_02885 at 659.629 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.651 kb on - strand at 659.743 kb on - strand at 659.743 kb on - strand at 659.743 kb on - strand at 660.494 kb on + strand, within PS417_02890 at 660.494 kb on + strand, within PS417_02890 at 660.494 kb on + strand, within PS417_02890 at 660.498 kb on + strand, within PS417_02890 at 660.498 kb on + strand, within PS417_02890 at 660.498 kb on + strand, within PS417_02890 at 660.499 kb on - strand at 660.499 kb on - strand at 660.517 kb on - strand at 661.334 kb on + strand, within PS417_02895 at 661.334 kb on + strand, within PS417_02895 at 661.532 kb on - strand, within PS417_02895
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 658,877 - PS417_02880 0.44 +1.3 659,076 - PS417_02880 0.86 -0.7 659,285 + PS417_02885 0.23 +1.3 659,303 - PS417_02885 0.28 +0.3 659,303 - PS417_02885 0.28 -0.2 659,303 - PS417_02885 0.28 -1.0 659,470 - PS417_02885 0.70 +1.3 659,629 - +2.1 659,651 - +0.4 659,651 - +0.3 659,651 - +0.6 659,743 - -1.0 659,743 - -1.0 659,743 - -0.5 660,494 + PS417_02890 0.89 +0.8 660,494 + PS417_02890 0.89 -1.3 660,494 + PS417_02890 0.89 +0.8 660,498 + PS417_02890 0.90 -0.7 660,498 + PS417_02890 0.90 -1.4 660,498 + PS417_02890 0.90 -1.8 660,499 - -0.8 660,499 - -0.6 660,517 - +0.6 661,334 + PS417_02895 0.64 +1.6 661,334 + PS417_02895 0.64 -1.3 661,532 - PS417_02895 0.80 -1.8
Or see this region's nucleotide sequence