Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27680 and PS417_27685 are separated by 133 nucleotides PS417_27685 and PS417_27690 are separated by 169 nucleotides PS417_27690 and PS417_27695 are separated by 116 nucleotides
PS417_27680: PS417_27680 - acetyl-CoA hydrolase, at 5,970,963 to 5,972,885
_27680
PS417_27685: PS417_27685 - cytochrome C, at 5,973,019 to 5,973,444
_27685
PS417_27690: PS417_27690 - XRE family transcriptional regulator, at 5,973,614 to 5,974,162
_27690
PS417_27695: PS417_27695 - alanine racemase, at 5,974,279 to 5,975,352
_27695
Position (kb) 5973
5974 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5972.032 kb on + strand, within PS417_27680 at 5972.062 kb on + strand, within PS417_27680 at 5972.296 kb on + strand, within PS417_27680 at 5972.297 kb on - strand, within PS417_27680 at 5972.370 kb on + strand, within PS417_27680 at 5972.513 kb on - strand, within PS417_27680 at 5972.722 kb on + strand at 5972.723 kb on - strand at 5972.993 kb on + strand at 5973.467 kb on - strand at 5973.541 kb on + strand at 5973.541 kb on + strand at 5973.546 kb on - strand at 5973.616 kb on - strand at 5973.706 kb on - strand, within PS417_27690 at 5973.706 kb on - strand, within PS417_27690 at 5973.914 kb on - strand, within PS417_27690 at 5973.914 kb on - strand, within PS417_27690 at 5973.936 kb on + strand, within PS417_27690 at 5973.936 kb on + strand, within PS417_27690 at 5973.997 kb on + strand, within PS417_27690 at 5973.997 kb on + strand, within PS417_27690 at 5973.998 kb on - strand, within PS417_27690 at 5974.130 kb on - strand at 5974.195 kb on + strand at 5974.196 kb on - strand at 5974.232 kb on - strand at 5974.232 kb on - strand at 5974.247 kb on - strand at 5974.292 kb on + strand at 5974.293 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,972,032 + PS417_27680 0.56 -0.2 5,972,062 + PS417_27680 0.57 +0.4 5,972,296 + PS417_27680 0.69 +1.2 5,972,297 - PS417_27680 0.69 -0.2 5,972,370 + PS417_27680 0.73 -0.7 5,972,513 - PS417_27680 0.81 +0.4 5,972,722 + -0.2 5,972,723 - +0.2 5,972,993 + -0.6 5,973,467 - -2.1 5,973,541 + -0.5 5,973,541 + -1.4 5,973,546 - +0.2 5,973,616 - -0.2 5,973,706 - PS417_27690 0.17 +1.4 5,973,706 - PS417_27690 0.17 +1.4 5,973,914 - PS417_27690 0.55 -1.2 5,973,914 - PS417_27690 0.55 +0.5 5,973,936 + PS417_27690 0.59 +0.6 5,973,936 + PS417_27690 0.59 +0.6 5,973,997 + PS417_27690 0.70 +1.9 5,973,997 + PS417_27690 0.70 -0.2 5,973,998 - PS417_27690 0.70 -0.2 5,974,130 - +0.9 5,974,195 + -0.0 5,974,196 - +0.8 5,974,232 - -0.9 5,974,232 - +0.2 5,974,247 - -1.1 5,974,292 + +0.3 5,974,293 - -1.1
Or see this region's nucleotide sequence