Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02665 and PS417_02670 overlap by 4 nucleotides PS417_02670 and PS417_02675 overlap by 4 nucleotides PS417_02675 and PS417_02680 are separated by 786 nucleotides
PS417_02665: PS417_02665 - branched-chain amino acid ABC transporter permease, at 610,189 to 611,466
_02665
PS417_02670: PS417_02670 - ABC transporter, at 611,463 to 612,338
_02670
PS417_02675: PS417_02675 - ABC transporter ATP-binding protein, at 612,335 to 613,051
_02675
PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605
_02680
Position (kb) 612
613
614 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 611.449 kb on - strand at 611.449 kb on - strand at 611.628 kb on + strand, within PS417_02670 at 611.628 kb on + strand, within PS417_02670 at 611.758 kb on - strand, within PS417_02670 at 611.961 kb on + strand, within PS417_02670 at 611.962 kb on - strand, within PS417_02670 at 612.307 kb on - strand at 612.307 kb on - strand at 612.335 kb on - strand at 612.335 kb on - strand at 612.347 kb on - strand at 612.374 kb on + strand at 612.377 kb on + strand at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.561 kb on - strand, within PS417_02675 at 612.727 kb on + strand, within PS417_02675 at 613.049 kb on + strand at 613.050 kb on - strand at 613.117 kb on - strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.237 kb on + strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.238 kb on - strand at 613.239 kb on + strand at 613.240 kb on - strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.430 kb on + strand at 613.431 kb on - strand at 613.431 kb on - strand at 613.431 kb on - strand at 613.432 kb on + strand at 613.432 kb on + strand at 613.433 kb on - strand at 613.443 kb on + strand at 613.443 kb on + strand at 613.444 kb on - strand at 613.444 kb on - strand at 613.477 kb on - strand at 613.556 kb on + strand at 613.556 kb on + strand at 613.556 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.560 kb on + strand at 613.561 kb on - strand at 613.561 kb on - strand at 613.619 kb on - strand at 613.638 kb on + strand at 613.638 kb on + strand at 613.639 kb on - strand at 613.686 kb on + strand at 613.855 kb on + strand at 613.856 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 611,449 - -0.1 611,449 - +0.6 611,628 + PS417_02670 0.19 -0.2 611,628 + PS417_02670 0.19 -0.4 611,758 - PS417_02670 0.34 -0.6 611,961 + PS417_02670 0.57 -1.4 611,962 - PS417_02670 0.57 -0.5 612,307 - -2.5 612,307 - +0.1 612,335 - -2.0 612,335 - +1.4 612,347 - +1.0 612,374 + +1.4 612,377 + -0.1 612,561 - PS417_02675 0.32 -1.3 612,561 - PS417_02675 0.32 -1.6 612,561 - PS417_02675 0.32 -1.4 612,561 - PS417_02675 0.32 -1.0 612,727 + PS417_02675 0.55 -2.3 613,049 + +0.8 613,050 - -0.0 613,117 - +1.4 613,237 + +0.5 613,237 + +0.7 613,237 + +0.1 613,238 - -0.5 613,238 - -0.6 613,238 - -0.2 613,238 - +0.2 613,239 + -0.7 613,240 - +0.5 613,430 + +0.1 613,430 + -0.7 613,430 + -0.2 613,430 + +0.4 613,431 - -3.0 613,431 - +2.4 613,431 - -0.6 613,432 + -2.2 613,432 + +0.4 613,433 - +1.0 613,443 + +1.9 613,443 + -0.2 613,444 - -0.5 613,444 - +0.4 613,477 - -0.8 613,556 + -0.4 613,556 + +0.4 613,556 + +1.4 613,560 + +3.2 613,560 + -0.2 613,560 + -0.3 613,560 + +0.7 613,561 - -0.1 613,561 - +0.9 613,619 - +0.1 613,638 + +0.2 613,638 + -0.1 613,639 - +0.9 613,686 + +0.7 613,855 + +0.7 613,856 - +0.5
Or see this region's nucleotide sequence