Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26475 and PS417_26480 are separated by 88 nucleotides PS417_26480 and PS417_26485 are separated by 191 nucleotides PS417_26485 and PS417_26490 overlap by 7 nucleotides PS417_26490 and PS417_26495 are separated by 71 nucleotides
PS417_26475: PS417_26475 - transglycosylase, at 5,725,138 to 5,726,322
_26475
PS417_26480: PS417_26480 - membrane protein, at 5,726,411 to 5,726,797
_26480
PS417_26485: PS417_26485 - sodium:proton antiporter, at 5,726,989 to 5,728,248
_26485
PS417_26490: PS417_26490 - membrane protein, at 5,728,242 to 5,729,129
_26490
PS417_26495: PS417_26495 - type III secretion system effector protein exou, at 5,729,201 to 5,731,132
_26495
Position (kb) 5726
5727
5728
5729 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5726.215 kb on - strand at 5726.345 kb on + strand at 5726.346 kb on - strand at 5726.413 kb on - strand at 5726.413 kb on - strand at 5726.421 kb on - strand at 5726.497 kb on - strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.508 kb on + strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.509 kb on - strand, within PS417_26480 at 5726.527 kb on + strand, within PS417_26480 at 5726.528 kb on - strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.751 kb on + strand, within PS417_26480 at 5726.752 kb on - strand, within PS417_26480 at 5726.813 kb on + strand at 5726.814 kb on - strand at 5726.820 kb on - strand at 5726.838 kb on + strand at 5726.839 kb on - strand at 5726.897 kb on + strand at 5726.898 kb on - strand at 5727.037 kb on + strand at 5727.038 kb on - strand at 5727.038 kb on - strand at 5727.245 kb on + strand, within PS417_26485 at 5727.246 kb on - strand, within PS417_26485 at 5727.340 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.343 kb on + strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.344 kb on - strand, within PS417_26485 at 5727.440 kb on + strand, within PS417_26485 at 5727.591 kb on - strand, within PS417_26485 at 5727.650 kb on - strand, within PS417_26485 at 5727.833 kb on - strand, within PS417_26485 at 5728.144 kb on + strand at 5728.145 kb on - strand at 5728.346 kb on + strand, within PS417_26490 at 5728.347 kb on - strand, within PS417_26490 at 5728.364 kb on + strand, within PS417_26490 at 5728.365 kb on - strand, within PS417_26490 at 5728.495 kb on + strand, within PS417_26490 at 5728.496 kb on - strand, within PS417_26490 at 5728.514 kb on + strand, within PS417_26490 at 5728.515 kb on - strand, within PS417_26490 at 5728.515 kb on - strand, within PS417_26490 at 5728.690 kb on + strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.691 kb on - strand, within PS417_26490 at 5728.865 kb on - strand, within PS417_26490 at 5729.158 kb on - strand at 5729.161 kb on + strand at 5729.162 kb on - strand at 5729.202 kb on + strand at 5729.202 kb on + strand at 5729.202 kb on + strand at 5729.203 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,726,215 - -2.1 5,726,345 + +1.8 5,726,346 - +1.4 5,726,413 - +0.3 5,726,413 - -0.5 5,726,421 - +1.0 5,726,497 - PS417_26480 0.22 +0.8 5,726,508 + PS417_26480 0.25 +0.5 5,726,508 + PS417_26480 0.25 -1.2 5,726,508 + PS417_26480 0.25 -0.6 5,726,508 + PS417_26480 0.25 +1.1 5,726,508 + PS417_26480 0.25 +1.8 5,726,509 - PS417_26480 0.25 +0.6 5,726,509 - PS417_26480 0.25 +2.1 5,726,527 + PS417_26480 0.30 -0.2 5,726,528 - PS417_26480 0.30 -0.4 5,726,751 + PS417_26480 0.88 -0.2 5,726,751 + PS417_26480 0.88 +0.4 5,726,751 + PS417_26480 0.88 +0.6 5,726,751 + PS417_26480 0.88 +0.0 5,726,752 - PS417_26480 0.88 -0.4 5,726,813 + -1.3 5,726,814 - -0.8 5,726,820 - -0.8 5,726,838 + -0.4 5,726,839 - -0.9 5,726,897 + +0.1 5,726,898 - +1.2 5,727,037 + +0.6 5,727,038 - -0.3 5,727,038 - +0.1 5,727,245 + PS417_26485 0.20 +0.1 5,727,246 - PS417_26485 0.20 -1.0 5,727,340 + PS417_26485 0.28 +0.5 5,727,343 + PS417_26485 0.28 -1.4 5,727,343 + PS417_26485 0.28 +0.3 5,727,344 - PS417_26485 0.28 -1.6 5,727,344 - PS417_26485 0.28 -2.3 5,727,440 + PS417_26485 0.36 +0.4 5,727,591 - PS417_26485 0.48 -0.6 5,727,650 - PS417_26485 0.52 -1.4 5,727,833 - PS417_26485 0.67 -0.9 5,728,144 + -0.7 5,728,145 - -1.2 5,728,346 + PS417_26490 0.12 -1.1 5,728,347 - PS417_26490 0.12 -1.3 5,728,364 + PS417_26490 0.14 -0.2 5,728,365 - PS417_26490 0.14 -0.0 5,728,495 + PS417_26490 0.28 -0.6 5,728,496 - PS417_26490 0.29 -0.6 5,728,514 + PS417_26490 0.31 +0.7 5,728,515 - PS417_26490 0.31 -0.2 5,728,515 - PS417_26490 0.31 +0.1 5,728,690 + PS417_26490 0.50 +2.1 5,728,691 - PS417_26490 0.51 +0.2 5,728,691 - PS417_26490 0.51 -0.3 5,728,691 - PS417_26490 0.51 +0.4 5,728,691 - PS417_26490 0.51 +0.8 5,728,691 - PS417_26490 0.51 -0.9 5,728,691 - PS417_26490 0.51 +0.2 5,728,691 - PS417_26490 0.51 -0.2 5,728,865 - PS417_26490 0.70 -1.3 5,729,158 - -0.8 5,729,161 + -0.0 5,729,162 - +0.0 5,729,202 + +0.0 5,729,202 + -1.4 5,729,202 + -0.2 5,729,203 - +0.7
Or see this region's nucleotide sequence