Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02555 and PS417_02560 overlap by 4 nucleotides PS417_02560 and PS417_02565 are separated by 309 nucleotides PS417_02565 and PS417_02570 are separated by 28 nucleotides
PS417_02555: PS417_02555 - exoribonuclease R, at 581,952 to 584,579
_02555
PS417_02560: PS417_02560 - 23S rRNA methyltransferase, at 584,576 to 585,331
_02560
PS417_02565: PS417_02565 - 30S ribosomal protein S6, at 585,641 to 586,063
_02565
PS417_02570: PS417_02570 - 30S ribosomal protein S18, at 586,092 to 586,322
_02570
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 583.641 kb on + strand, within PS417_02555 at 583.686 kb on + strand, within PS417_02555 at 583.686 kb on + strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.687 kb on - strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.697 kb on + strand, within PS417_02555 at 583.698 kb on - strand, within PS417_02555 at 583.698 kb on - strand, within PS417_02555 at 583.824 kb on + strand, within PS417_02555 at 583.830 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.019 kb on + strand, within PS417_02555 at 584.020 kb on - strand, within PS417_02555 at 584.061 kb on + strand, within PS417_02555 at 584.061 kb on + strand, within PS417_02555 at 584.061 kb on + strand, within PS417_02555 at 584.062 kb on - strand, within PS417_02555 at 584.064 kb on + strand, within PS417_02555 at 584.065 kb on - strand, within PS417_02555 at 584.065 kb on - strand, within PS417_02555 at 584.441 kb on + strand at 584.496 kb on - strand at 584.610 kb on + strand at 584.758 kb on - strand, within PS417_02560 at 585.125 kb on + strand, within PS417_02560 at 585.126 kb on - strand, within PS417_02560 at 585.126 kb on - strand, within PS417_02560 at 585.330 kb on - strand at 585.388 kb on + strand at 585.463 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 583,641 + PS417_02555 0.64 -0.2 583,686 + PS417_02555 0.66 +1.4 583,686 + PS417_02555 0.66 +0.4 583,687 - PS417_02555 0.66 +0.4 583,687 - PS417_02555 0.66 -0.6 583,687 - PS417_02555 0.66 +1.4 583,687 - PS417_02555 0.66 -0.2 583,697 + PS417_02555 0.66 +1.4 583,697 + PS417_02555 0.66 +1.4 583,697 + PS417_02555 0.66 -0.6 583,697 + PS417_02555 0.66 +1.4 583,698 - PS417_02555 0.66 +0.4 583,698 - PS417_02555 0.66 +1.4 583,824 + PS417_02555 0.71 -0.7 583,830 + PS417_02555 0.71 +0.8 584,019 + PS417_02555 0.79 -0.4 584,019 + PS417_02555 0.79 -2.3 584,019 + PS417_02555 0.79 -2.9 584,019 + PS417_02555 0.79 -1.9 584,019 + PS417_02555 0.79 -2.6 584,020 - PS417_02555 0.79 -1.8 584,061 + PS417_02555 0.80 +0.4 584,061 + PS417_02555 0.80 -1.2 584,061 + PS417_02555 0.80 -0.6 584,062 - PS417_02555 0.80 -2.2 584,064 + PS417_02555 0.80 -1.0 584,065 - PS417_02555 0.80 +0.4 584,065 - PS417_02555 0.80 +0.4 584,441 + +1.5 584,496 - -1.2 584,610 + -1.0 584,758 - PS417_02560 0.24 -1.6 585,125 + PS417_02560 0.73 +0.8 585,126 - PS417_02560 0.73 -1.8 585,126 - PS417_02560 0.73 -2.0 585,330 - -0.7 585,388 + +0.8 585,463 + +0.1
Or see this region's nucleotide sequence