Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_22075 and PS417_22080 are separated by 57 nucleotides PS417_22080 and PS417_22085 are separated by 55 nucleotides PS417_22085 and PS417_22090 are separated by 205 nucleotides PS417_22090 and PS417_22095 are separated by 12 nucleotides
PS417_22075: PS417_22075 - alpha/beta hydrolase, at 4,784,306 to 4,785,250
_22075
PS417_22080: PS417_22080 - 3-hydroxybutyryl-CoA dehydratase, at 4,785,308 to 4,785,778
_22080
PS417_22085: PS417_22085 - aldehyde dehydrogenase, at 4,785,834 to 4,786,301
_22085
PS417_22090: PS417_22090 - hypothetical protein, at 4,786,507 to 4,786,743
_22090
PS417_22095: PS417_22095 - class V aminotransferase, at 4,786,756 to 4,787,931
_22095
Position (kb) 4785
4786
4787 Strain fitness (log2 ratio) -2
-1
0
1 at 4784.906 kb on + strand, within PS417_22075 at 4784.906 kb on + strand, within PS417_22075 at 4784.907 kb on - strand, within PS417_22075 at 4785.195 kb on + strand at 4785.196 kb on - strand at 4785.857 kb on + strand at 4785.892 kb on - strand, within PS417_22085 at 4785.901 kb on + strand, within PS417_22085 at 4785.901 kb on + strand, within PS417_22085 at 4786.424 kb on - strand at 4786.562 kb on - strand, within PS417_22090 at 4786.562 kb on - strand, within PS417_22090 at 4786.755 kb on + strand at 4786.755 kb on + strand at 4786.756 kb on - strand at 4786.756 kb on - strand at 4786.902 kb on + strand, within PS417_22095 at 4786.928 kb on + strand, within PS417_22095 at 4786.928 kb on + strand, within PS417_22095 at 4787.059 kb on + strand, within PS417_22095 at 4787.060 kb on - strand, within PS417_22095 at 4787.060 kb on - strand, within PS417_22095 at 4787.088 kb on - strand, within PS417_22095 at 4787.215 kb on + strand, within PS417_22095
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,784,906 + PS417_22075 0.63 -0.5 4,784,906 + PS417_22075 0.63 -1.1 4,784,907 - PS417_22075 0.64 -1.0 4,785,195 + -1.5 4,785,196 - -1.0 4,785,857 + -1.2 4,785,892 - PS417_22085 0.12 -1.0 4,785,901 + PS417_22085 0.14 -0.7 4,785,901 + PS417_22085 0.14 +0.8 4,786,424 - -1.0 4,786,562 - PS417_22090 0.23 -1.1 4,786,562 - PS417_22090 0.23 -2.0 4,786,755 + +0.4 4,786,755 + -0.2 4,786,756 - -1.6 4,786,756 - +0.8 4,786,902 + PS417_22095 0.12 +0.1 4,786,928 + PS417_22095 0.15 -1.0 4,786,928 + PS417_22095 0.15 +0.0 4,787,059 + PS417_22095 0.26 -1.2 4,787,060 - PS417_22095 0.26 +1.4 4,787,060 - PS417_22095 0.26 -1.0 4,787,088 - PS417_22095 0.28 +0.2 4,787,215 + PS417_22095 0.39 -0.5
Or see this region's nucleotide sequence