Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_20205 and PS417_20210 are separated by 103 nucleotides PS417_20210 and PS417_20215 overlap by 89 nucleotides
PS417_20205: PS417_20205 - LysR family transcriptional regulator, at 4,389,661 to 4,390,554
_20205
PS417_20210: PS417_20210 - membrane protein, at 4,390,658 to 4,391,866
_20210
PS417_20215: PS417_20215 - nitrate reductase, at 4,391,778 to 4,393,220
_20215
Position (kb) 4390
4391
4392 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4389.747 kb on + strand at 4389.902 kb on + strand, within PS417_20205 at 4390.224 kb on - strand, within PS417_20205 at 4390.265 kb on + strand, within PS417_20205 at 4390.265 kb on + strand, within PS417_20205 at 4390.266 kb on - strand, within PS417_20205 at 4390.266 kb on - strand, within PS417_20205 at 4390.266 kb on - strand, within PS417_20205 at 4390.356 kb on - strand, within PS417_20205 at 4390.421 kb on - strand, within PS417_20205 at 4390.630 kb on + strand at 4390.638 kb on + strand at 4390.677 kb on + strand at 4390.678 kb on - strand at 4390.817 kb on + strand, within PS417_20210 at 4390.902 kb on + strand, within PS417_20210 at 4391.288 kb on + strand, within PS417_20210 at 4391.288 kb on + strand, within PS417_20210 at 4391.288 kb on + strand, within PS417_20210 at 4391.288 kb on + strand, within PS417_20210 at 4391.288 kb on + strand, within PS417_20210 at 4391.288 kb on + strand, within PS417_20210 at 4391.289 kb on - strand, within PS417_20210 at 4391.289 kb on - strand, within PS417_20210 at 4391.289 kb on - strand, within PS417_20210 at 4391.289 kb on - strand, within PS417_20210 at 4391.289 kb on - strand, within PS417_20210 at 4391.289 kb on - strand, within PS417_20210 at 4391.289 kb on - strand, within PS417_20210 at 4391.297 kb on + strand, within PS417_20210 at 4391.297 kb on + strand, within PS417_20210 at 4391.297 kb on + strand, within PS417_20210 at 4391.298 kb on - strand, within PS417_20210 at 4391.298 kb on - strand, within PS417_20210 at 4391.298 kb on - strand, within PS417_20210 at 4391.309 kb on + strand at 4391.309 kb on + strand at 4391.310 kb on - strand, within PS417_20210 at 4391.310 kb on - strand, within PS417_20210 at 4391.310 kb on - strand, within PS417_20210 at 4391.578 kb on + strand, within PS417_20210 at 4391.579 kb on - strand, within PS417_20210 at 4391.842 kb on - strand at 4391.842 kb on - strand at 4391.980 kb on + strand, within PS417_20215 at 4392.110 kb on - strand, within PS417_20215 at 4392.110 kb on - strand, within PS417_20215 at 4392.317 kb on + strand, within PS417_20215 at 4392.317 kb on + strand, within PS417_20215 at 4392.464 kb on + strand, within PS417_20215 at 4392.464 kb on + strand, within PS417_20215 at 4392.465 kb on - strand, within PS417_20215 at 4392.517 kb on + strand, within PS417_20215 at 4392.518 kb on - strand, within PS417_20215 at 4392.518 kb on - strand, within PS417_20215 at 4392.684 kb on - strand, within PS417_20215 at 4392.717 kb on + strand, within PS417_20215 at 4392.718 kb on - strand, within PS417_20215 at 4392.796 kb on + strand, within PS417_20215 at 4392.796 kb on + strand, within PS417_20215 at 4392.856 kb on + strand, within PS417_20215 at 4392.856 kb on + strand, within PS417_20215 at 4392.857 kb on - strand, within PS417_20215
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,389,747 + -0.5 4,389,902 + PS417_20205 0.27 +0.2 4,390,224 - PS417_20205 0.63 +0.4 4,390,265 + PS417_20205 0.68 +0.9 4,390,265 + PS417_20205 0.68 -1.4 4,390,266 - PS417_20205 0.68 -0.3 4,390,266 - PS417_20205 0.68 -0.1 4,390,266 - PS417_20205 0.68 -1.6 4,390,356 - PS417_20205 0.78 -0.3 4,390,421 - PS417_20205 0.85 -0.6 4,390,630 + +0.1 4,390,638 + -1.2 4,390,677 + -0.1 4,390,678 - -0.9 4,390,817 + PS417_20210 0.13 -0.1 4,390,902 + PS417_20210 0.20 -0.9 4,391,288 + PS417_20210 0.52 -0.1 4,391,288 + PS417_20210 0.52 +0.4 4,391,288 + PS417_20210 0.52 +0.2 4,391,288 + PS417_20210 0.52 -0.1 4,391,288 + PS417_20210 0.52 +1.0 4,391,288 + PS417_20210 0.52 -0.3 4,391,289 - PS417_20210 0.52 -0.0 4,391,289 - PS417_20210 0.52 +0.3 4,391,289 - PS417_20210 0.52 +1.1 4,391,289 - PS417_20210 0.52 +0.6 4,391,289 - PS417_20210 0.52 -2.2 4,391,289 - PS417_20210 0.52 +0.9 4,391,289 - PS417_20210 0.52 -0.1 4,391,297 + PS417_20210 0.53 +0.1 4,391,297 + PS417_20210 0.53 +0.9 4,391,297 + PS417_20210 0.53 +0.7 4,391,298 - PS417_20210 0.53 +1.4 4,391,298 - PS417_20210 0.53 -0.1 4,391,298 - PS417_20210 0.53 +4.0 4,391,309 + +1.4 4,391,309 + -1.6 4,391,310 - PS417_20210 0.54 -1.4 4,391,310 - PS417_20210 0.54 +0.4 4,391,310 - PS417_20210 0.54 -0.8 4,391,578 + PS417_20210 0.76 -0.2 4,391,579 - PS417_20210 0.76 +1.0 4,391,842 - +0.2 4,391,842 - -1.0 4,391,980 + PS417_20215 0.14 +0.3 4,392,110 - PS417_20215 0.23 +0.2 4,392,110 - PS417_20215 0.23 -0.5 4,392,317 + PS417_20215 0.37 +0.1 4,392,317 + PS417_20215 0.37 -1.1 4,392,464 + PS417_20215 0.48 +0.4 4,392,464 + PS417_20215 0.48 -0.0 4,392,465 - PS417_20215 0.48 -0.3 4,392,517 + PS417_20215 0.51 +1.2 4,392,518 - PS417_20215 0.51 +0.1 4,392,518 - PS417_20215 0.51 +0.6 4,392,684 - PS417_20215 0.63 +0.6 4,392,717 + PS417_20215 0.65 +0.0 4,392,718 - PS417_20215 0.65 -0.9 4,392,796 + PS417_20215 0.71 +2.0 4,392,796 + PS417_20215 0.71 +1.0 4,392,856 + PS417_20215 0.75 +0.0 4,392,856 + PS417_20215 0.75 +0.6 4,392,857 - PS417_20215 0.75 -2.7
Or see this region's nucleotide sequence