Strain Fitness in Pseudomonas simiae WCS417 around PS417_00145

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_00140 and PS417_00145 are separated by 103 nucleotidesPS417_00145 and PS417_00150 are separated by 31 nucleotidesPS417_00150 and PS417_00155 are separated by 96 nucleotides PS417_00140: PS417_00140 - choline-sulfatase, at 29,951 to 31,465 _00140 PS417_00145: PS417_00145 - LysR family transcriptional regulator, at 31,569 to 32,519 _00145 PS417_00150: PS417_00150 - 4,5-dioxygenase, at 32,551 to 32,880 _00150 PS417_00155: PS417_00155 - 2-dehydro-3-deoxygalactonokinase, at 32,977 to 33,936 _00155 Position (kb) 31 32 33Strain fitness (log2 ratio) -2 -1 0 1 2 3at 30.687 kb on + strand, within PS417_00140at 30.687 kb on + strand, within PS417_00140at 30.705 kb on + strand, within PS417_00140at 30.706 kb on - strand, within PS417_00140at 30.706 kb on - strand, within PS417_00140at 30.763 kb on - strand, within PS417_00140at 30.817 kb on + strand, within PS417_00140at 30.817 kb on + strandat 30.827 kb on + strand, within PS417_00140at 30.827 kb on + strand, within PS417_00140at 30.827 kb on + strand, within PS417_00140at 30.827 kb on + strand, within PS417_00140at 30.828 kb on - strand, within PS417_00140at 30.828 kb on - strand, within PS417_00140at 30.828 kb on - strand, within PS417_00140at 30.874 kb on - strand, within PS417_00140at 30.952 kb on - strand, within PS417_00140at 30.952 kb on - strand, within PS417_00140at 30.952 kb on - strand, within PS417_00140at 31.105 kb on - strand, within PS417_00140at 31.206 kb on + strand, within PS417_00140at 31.206 kb on + strand, within PS417_00140at 31.215 kb on + strand, within PS417_00140at 31.215 kb on + strand, within PS417_00140at 31.215 kb on + strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.216 kb on - strand, within PS417_00140at 31.329 kb on + strandat 31.401 kb on + strandat 31.402 kb on - strandat 31.925 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.948 kb on + strand, within PS417_00145at 31.949 kb on - strand, within PS417_00145at 31.949 kb on - strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.256 kb on + strand, within PS417_00145at 32.257 kb on - strand, within PS417_00145at 32.257 kb on - strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.391 kb on + strand, within PS417_00145at 32.392 kb on - strand, within PS417_00145at 32.518 kb on - strandat 32.518 kb on - strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.559 kb on + strandat 32.560 kb on - strandat 32.581 kb on - strandat 32.581 kb on - strandat 32.584 kb on + strand, within PS417_00150at 32.584 kb on + strand, within PS417_00150at 32.585 kb on - strand, within PS417_00150at 32.585 kb on - strand, within PS417_00150at 32.728 kb on + strand, within PS417_00150at 32.728 kb on + strand, within PS417_00150at 32.728 kb on + strand, within PS417_00150at 32.729 kb on - strand, within PS417_00150at 32.729 kb on - strand, within PS417_00150at 32.828 kb on - strandat 32.828 kb on - strand, within PS417_00150at 32.878 kb on + strandat 32.913 kb on - strandat 32.934 kb on + strandat 32.934 kb on + strandat 32.935 kb on - strandat 32.940 kb on + strandat 32.942 kb on + strandat 33.028 kb on + strandat 33.028 kb on + strandat 33.029 kb on - strandat 33.030 kb on + strandat 33.297 kb on + strand, within PS417_00155at 33.298 kb on - strand, within PS417_00155at 33.483 kb on + strand, within PS417_00155at 33.499 kb on - strand, within PS417_00155

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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30,687 + PS417_00140 0.49 +0.1
30,687 + PS417_00140 0.49 +1.1
30,705 + PS417_00140 0.50 -0.7
30,706 - PS417_00140 0.50 -0.8
30,706 - PS417_00140 0.50 -0.7
30,763 - PS417_00140 0.54 -1.2
30,817 + PS417_00140 0.57 -0.3
30,817 + +1.3
30,827 + PS417_00140 0.58 -1.0
30,827 + PS417_00140 0.58 -0.7
30,827 + PS417_00140 0.58 +0.3
30,827 + PS417_00140 0.58 -1.0
30,828 - PS417_00140 0.58 -2.0
30,828 - PS417_00140 0.58 -0.1
30,828 - PS417_00140 0.58 +0.6
30,874 - PS417_00140 0.61 -0.8
30,952 - PS417_00140 0.66 -0.4
30,952 - PS417_00140 0.66 -1.0
30,952 - PS417_00140 0.66 +0.6
31,105 - PS417_00140 0.76 +0.3
31,206 + PS417_00140 0.83 +1.3
31,206 + PS417_00140 0.83 -1.0
31,215 + PS417_00140 0.83 +2.3
31,215 + PS417_00140 0.83 -0.5
31,215 + PS417_00140 0.83 -0.5
31,216 - PS417_00140 0.83 +0.5
31,216 - PS417_00140 0.83 +0.2
31,216 - PS417_00140 0.83 -0.4
31,216 - PS417_00140 0.83 -1.6
31,329 + +0.7
31,401 + +1.0
31,402 - -0.7
31,925 + PS417_00145 0.37 +0.1
31,948 + PS417_00145 0.40 -0.0
31,948 + PS417_00145 0.40 -0.1
31,948 + PS417_00145 0.40 -0.3
31,948 + PS417_00145 0.40 +1.8
31,948 + PS417_00145 0.40 -0.4
31,948 + PS417_00145 0.40 +0.3
31,948 + PS417_00145 0.40 +0.3
31,949 - PS417_00145 0.40 -1.0
31,949 - PS417_00145 0.40 +0.3
32,256 + PS417_00145 0.72 +1.5
32,256 + PS417_00145 0.72 -0.5
32,256 + PS417_00145 0.72 -0.0
32,256 + PS417_00145 0.72 -2.0
32,256 + PS417_00145 0.72 +0.8
32,257 - PS417_00145 0.72 -0.5
32,257 - PS417_00145 0.72 +2.8
32,391 + PS417_00145 0.86 -0.8
32,391 + PS417_00145 0.86 +0.3
32,391 + PS417_00145 0.86 +0.8
32,392 - PS417_00145 0.87 +0.5
32,518 - -0.5
32,518 - -1.9
32,559 + +0.3
32,559 + +0.0
32,559 + +0.9
32,559 + +0.2
32,560 - +1.5
32,581 - +2.3
32,581 - +0.3
32,584 + PS417_00150 0.10 -1.1
32,584 + PS417_00150 0.10 -0.5
32,585 - PS417_00150 0.10 +1.1
32,585 - PS417_00150 0.10 +0.2
32,728 + PS417_00150 0.54 +1.3
32,728 + PS417_00150 0.54 +3.6
32,728 + PS417_00150 0.54 -0.8
32,729 - PS417_00150 0.54 +0.4
32,729 - PS417_00150 0.54 -0.6
32,828 - +2.3
32,828 - PS417_00150 0.84 +0.8
32,878 + -1.0
32,913 - +0.7
32,934 + +1.6
32,934 + +0.1
32,935 - -0.5
32,940 + -0.8
32,942 + +0.3
33,028 + -0.3
33,028 + -0.6
33,029 - +0.8
33,030 + +0.3
33,297 + PS417_00155 0.33 +0.0
33,298 - PS417_00155 0.33 +0.1
33,483 + PS417_00155 0.53 +0.3
33,499 - PS417_00155 0.54 -0.1

Or see this region's nucleotide sequence