Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01395 and PS417_01400 are separated by 26 nucleotides PS417_01400 and PS417_01405 are separated by 5 nucleotides PS417_01405 and PS417_01410 overlap by 23 nucleotides PS417_01410 and PS417_01415 overlap by 11 nucleotides
PS417_01395: PS417_01395 - biofilm formation protein PelB, at 306,182 to 309,781
_01395
PS417_01400: PS417_01400 - hypothetical protein, at 309,808 to 310,326
_01400
PS417_01405: PS417_01405 - sugar transporter, at 310,332 to 311,699
_01405
PS417_01410: PS417_01410 - transporter, at 311,677 to 312,672
_01410
PS417_01415: PS417_01415 - glycosyl transferase family 1, at 312,662 to 314,176
_01415
Position (kb) 310
311
312 Strain fitness (log2 ratio) -2
-1
0
1
2 at 309.356 kb on + strand, within PS417_01395 at 309.357 kb on - strand, within PS417_01395 at 309.392 kb on + strand, within PS417_01395 at 309.393 kb on - strand at 309.393 kb on - strand, within PS417_01395 at 309.393 kb on - strand, within PS417_01395 at 309.519 kb on - strand at 309.519 kb on - strand at 309.578 kb on + strand at 309.579 kb on - strand at 309.635 kb on + strand at 309.635 kb on + strand at 309.636 kb on - strand at 309.636 kb on - strand at 309.758 kb on + strand at 309.793 kb on - strand at 309.845 kb on + strand at 309.846 kb on - strand at 309.938 kb on - strand, within PS417_01400 at 310.148 kb on - strand, within PS417_01400 at 310.403 kb on - strand at 310.599 kb on + strand, within PS417_01405 at 310.602 kb on - strand at 310.714 kb on - strand, within PS417_01405 at 311.596 kb on + strand at 311.649 kb on - strand at 311.649 kb on - strand at 311.659 kb on - strand at 311.659 kb on - strand at 311.950 kb on + strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 311.951 kb on - strand, within PS417_01410 at 312.323 kb on - strand, within PS417_01410 at 312.577 kb on + strand at 312.671 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 309,356 + PS417_01395 0.88 -0.3 309,357 - PS417_01395 0.88 -1.7 309,392 + PS417_01395 0.89 -1.8 309,393 - -0.3 309,393 - PS417_01395 0.89 +0.0 309,393 - PS417_01395 0.89 +0.5 309,519 - +0.8 309,519 - -0.4 309,578 + +0.7 309,579 - +0.1 309,635 + -1.3 309,635 + -0.4 309,636 - +0.5 309,636 - -0.1 309,758 + -1.0 309,793 - -0.5 309,845 + -0.1 309,846 - -1.7 309,938 - PS417_01400 0.25 -1.4 310,148 - PS417_01400 0.66 -0.5 310,403 - -0.1 310,599 + PS417_01405 0.20 -1.2 310,602 - +2.3 310,714 - PS417_01405 0.28 -2.2 311,596 + -0.7 311,649 - -1.5 311,649 - -1.3 311,659 - +1.2 311,659 - +0.7 311,950 + PS417_01410 0.27 -0.9 311,951 - PS417_01410 0.28 +1.1 311,951 - PS417_01410 0.28 -2.0 311,951 - PS417_01410 0.28 -0.8 312,323 - PS417_01410 0.65 +0.1 312,577 + +0.3 312,671 - +0.5
Or see this region's nucleotide sequence