Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01280 and PS417_01285 are separated by 141 nucleotides PS417_01285 and PS417_01290 are separated by 87 nucleotides PS417_01290 and PS417_01295 overlap by 4 nucleotides PS417_01295 and PS417_01300 are separated by 126 nucleotides
PS417_01280: PS417_01280 - peptidoglycan-binding protein LysM, at 278,903 to 279,343
_01280
PS417_01285: PS417_01285 - haloacid dehalogenase, at 279,485 to 280,147
_01285
PS417_01290: PS417_01290 - ADP-ribose diphosphatase, at 280,235 to 280,801
_01290
PS417_01295: PS417_01295 - adenosine-3'(2'),5'-bisphosphate nucleotidase, at 280,798 to 281,634
_01295
PS417_01300: PS417_01300 - thioesterase, at 281,761 to 282,216
_01300
Position (kb) 280
281 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.258 kb on - strand, within PS417_01280 at 279.258 kb on - strand, within PS417_01280 at 279.342 kb on - strand at 279.420 kb on - strand at 279.511 kb on - strand at 279.949 kb on - strand, within PS417_01285 at 279.971 kb on - strand, within PS417_01285 at 280.162 kb on + strand at 280.162 kb on + strand at 280.162 kb on + strand at 280.163 kb on - strand at 280.166 kb on + strand at 280.166 kb on + strand at 280.167 kb on - strand at 280.167 kb on - strand at 280.203 kb on + strand at 280.205 kb on + strand at 280.206 kb on - strand at 280.206 kb on - strand at 280.269 kb on + strand at 280.430 kb on + strand, within PS417_01290 at 280.452 kb on - strand, within PS417_01290 at 280.754 kb on + strand at 281.192 kb on - strand, within PS417_01295 at 281.192 kb on - strand, within PS417_01295 at 281.577 kb on - strand at 281.645 kb on - strand at 281.778 kb on - strand at 281.778 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 279,258 - PS417_01280 0.80 -0.0 279,258 - PS417_01280 0.80 +2.6 279,342 - +0.2 279,420 - -0.8 279,511 - +1.7 279,949 - PS417_01285 0.70 +0.1 279,971 - PS417_01285 0.73 -0.6 280,162 + +0.3 280,162 + -1.0 280,162 + -1.0 280,163 - +0.5 280,166 + -0.0 280,166 + +0.3 280,167 - +1.4 280,167 - +1.3 280,203 + -0.6 280,205 + -0.6 280,206 - -0.1 280,206 - +1.3 280,269 + +0.6 280,430 + PS417_01290 0.34 -2.5 280,452 - PS417_01290 0.38 -2.7 280,754 + +0.3 281,192 - PS417_01295 0.47 +1.3 281,192 - PS417_01295 0.47 +1.3 281,577 - +0.3 281,645 - +0.3 281,778 - -0.5 281,778 - +0.3
Or see this region's nucleotide sequence