Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_12200 and PS417_12205 are separated by 0 nucleotides PS417_12205 and PS417_12210 overlap by 4 nucleotides
PS417_12200: PS417_12200 - microcin ABC transporter permease, at 2,650,453 to 2,651,529
_12200
PS417_12205: PS417_12205 - hypothetical protein, at 2,651,530 to 2,653,362
_12205
PS417_12210: PS417_12210 - ABC transporter substrate-binding protein, at 2,653,359 to 2,655,188
_12210
Position (kb)
2651
2652
2653
2654 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2650.721 kb on - strand, within PS417_12200 at 2650.721 kb on - strand, within PS417_12200 at 2650.721 kb on - strand, within PS417_12200 at 2650.779 kb on - strand, within PS417_12200 at 2651.112 kb on - strand, within PS417_12200 at 2651.112 kb on - strand, within PS417_12200 at 2651.277 kb on - strand, within PS417_12200 at 2651.277 kb on - strand, within PS417_12200 at 2651.331 kb on - strand, within PS417_12200 at 2651.519 kb on + strand at 2651.531 kb on + strand at 2651.585 kb on - strand at 2651.685 kb on + strand at 2651.706 kb on - strand at 2651.825 kb on + strand, within PS417_12205 at 2651.825 kb on + strand, within PS417_12205 at 2651.825 kb on + strand, within PS417_12205 at 2652.509 kb on + strand, within PS417_12205 at 2652.603 kb on - strand, within PS417_12205 at 2652.629 kb on + strand, within PS417_12205 at 2652.629 kb on + strand, within PS417_12205 at 2652.665 kb on + strand, within PS417_12205 at 2652.722 kb on + strand, within PS417_12205 at 2652.723 kb on - strand, within PS417_12205 at 2653.157 kb on + strand, within PS417_12205 at 2653.158 kb on - strand, within PS417_12205 at 2653.355 kb on + strand at 2653.355 kb on + strand at 2653.356 kb on - strand at 2653.356 kb on - strand at 2653.410 kb on - strand at 2653.463 kb on - strand at 2653.610 kb on - strand, within PS417_12210 at 2653.652 kb on - strand, within PS417_12210 at 2653.652 kb on - strand, within PS417_12210 at 2653.738 kb on + strand, within PS417_12210 at 2653.843 kb on - strand at 2653.992 kb on - strand, within PS417_12210 at 2654.090 kb on - strand, within PS417_12210 at 2654.108 kb on - strand, within PS417_12210 at 2654.329 kb on + strand, within PS417_12210 at 2654.330 kb on - strand, within PS417_12210 at 2654.330 kb on - strand, within PS417_12210 at 2654.330 kb on - strand, within PS417_12210 at 2654.330 kb on - strand, within PS417_12210 at 2654.330 kb on - strand, within PS417_12210
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 2,650,721 - PS417_12200 0.25 -0.1 2,650,721 - PS417_12200 0.25 +0.1 2,650,721 - PS417_12200 0.25 +0.3 2,650,779 - PS417_12200 0.30 -1.3 2,651,112 - PS417_12200 0.61 -0.3 2,651,112 - PS417_12200 0.61 -1.3 2,651,277 - PS417_12200 0.77 -0.7 2,651,277 - PS417_12200 0.77 -1.7 2,651,331 - PS417_12200 0.82 -2.3 2,651,519 + -1.1 2,651,531 + -2.3 2,651,585 - -0.7 2,651,685 + -2.2 2,651,706 - -3.7 2,651,825 + PS417_12205 0.16 -1.8 2,651,825 + PS417_12205 0.16 +0.7 2,651,825 + PS417_12205 0.16 +1.3 2,652,509 + PS417_12205 0.53 +1.3 2,652,603 - PS417_12205 0.59 -2.5 2,652,629 + PS417_12205 0.60 -1.2 2,652,629 + PS417_12205 0.60 -1.2 2,652,665 + PS417_12205 0.62 -2.3 2,652,722 + PS417_12205 0.65 -3.2 2,652,723 - PS417_12205 0.65 -0.5 2,653,157 + PS417_12205 0.89 -1.4 2,653,158 - PS417_12205 0.89 -1.8 2,653,355 + +0.3 2,653,355 + -0.8 2,653,356 - -2.0 2,653,356 - -0.3 2,653,410 - -2.0 2,653,463 - -0.6 2,653,610 - PS417_12210 0.14 -0.3 2,653,652 - PS417_12210 0.16 +1.3 2,653,652 - PS417_12210 0.16 -0.5 2,653,738 + PS417_12210 0.21 -1.9 2,653,843 - +0.3 2,653,992 - PS417_12210 0.35 -0.1 2,654,090 - PS417_12210 0.40 -0.2 2,654,108 - PS417_12210 0.41 +0.2 2,654,329 + PS417_12210 0.53 -0.5 2,654,330 - PS417_12210 0.53 -0.4 2,654,330 - PS417_12210 0.53 +0.5 2,654,330 - PS417_12210 0.53 +1.3 2,654,330 - PS417_12210 0.53 -0.3 2,654,330 - PS417_12210 0.53 -0.2
Or see this region's nucleotide sequence