Strain Fitness in Pseudomonas simiae WCS417 around PS417_12205

Experiment: Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_12200 and PS417_12205 are separated by 0 nucleotidesPS417_12205 and PS417_12210 overlap by 4 nucleotides PS417_12200: PS417_12200 - microcin ABC transporter permease, at 2,650,453 to 2,651,529 _12200 PS417_12205: PS417_12205 - hypothetical protein, at 2,651,530 to 2,653,362 _12205 PS417_12210: PS417_12210 - ABC transporter substrate-binding protein, at 2,653,359 to 2,655,188 _12210 Position (kb) 2651 2652 2653 2654Strain fitness (log2 ratio) -3 -2 -1 0 1at 2650.721 kb on - strand, within PS417_12200at 2650.721 kb on - strand, within PS417_12200at 2650.721 kb on - strand, within PS417_12200at 2650.779 kb on - strand, within PS417_12200at 2651.112 kb on - strand, within PS417_12200at 2651.112 kb on - strand, within PS417_12200at 2651.277 kb on - strand, within PS417_12200at 2651.277 kb on - strand, within PS417_12200at 2651.331 kb on - strand, within PS417_12200at 2651.519 kb on + strandat 2651.531 kb on + strandat 2651.585 kb on - strandat 2651.685 kb on + strandat 2651.706 kb on - strandat 2651.825 kb on + strand, within PS417_12205at 2651.825 kb on + strand, within PS417_12205at 2651.825 kb on + strand, within PS417_12205at 2652.509 kb on + strand, within PS417_12205at 2652.603 kb on - strand, within PS417_12205at 2652.629 kb on + strand, within PS417_12205at 2652.629 kb on + strand, within PS417_12205at 2652.665 kb on + strand, within PS417_12205at 2652.722 kb on + strand, within PS417_12205at 2652.723 kb on - strand, within PS417_12205at 2653.157 kb on + strand, within PS417_12205at 2653.158 kb on - strand, within PS417_12205at 2653.355 kb on + strandat 2653.355 kb on + strandat 2653.356 kb on - strandat 2653.356 kb on - strandat 2653.410 kb on - strandat 2653.463 kb on - strandat 2653.610 kb on - strand, within PS417_12210at 2653.652 kb on - strand, within PS417_12210at 2653.652 kb on - strand, within PS417_12210at 2653.738 kb on + strand, within PS417_12210at 2653.843 kb on - strandat 2653.992 kb on - strand, within PS417_12210at 2654.090 kb on - strand, within PS417_12210at 2654.108 kb on - strand, within PS417_12210at 2654.329 kb on + strand, within PS417_12210at 2654.330 kb on - strand, within PS417_12210at 2654.330 kb on - strand, within PS417_12210at 2654.330 kb on - strand, within PS417_12210at 2654.330 kb on - strand, within PS417_12210at 2654.330 kb on - strand, within PS417_12210

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=34_degrees_celsius; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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2,650,721 - PS417_12200 0.25 -0.1
2,650,721 - PS417_12200 0.25 +0.1
2,650,721 - PS417_12200 0.25 +0.3
2,650,779 - PS417_12200 0.30 -1.3
2,651,112 - PS417_12200 0.61 -0.3
2,651,112 - PS417_12200 0.61 -1.3
2,651,277 - PS417_12200 0.77 -0.7
2,651,277 - PS417_12200 0.77 -1.7
2,651,331 - PS417_12200 0.82 -2.3
2,651,519 + -1.1
2,651,531 + -2.3
2,651,585 - -0.7
2,651,685 + -2.2
2,651,706 - -3.7
2,651,825 + PS417_12205 0.16 -1.8
2,651,825 + PS417_12205 0.16 +0.7
2,651,825 + PS417_12205 0.16 +1.3
2,652,509 + PS417_12205 0.53 +1.3
2,652,603 - PS417_12205 0.59 -2.5
2,652,629 + PS417_12205 0.60 -1.2
2,652,629 + PS417_12205 0.60 -1.2
2,652,665 + PS417_12205 0.62 -2.3
2,652,722 + PS417_12205 0.65 -3.2
2,652,723 - PS417_12205 0.65 -0.5
2,653,157 + PS417_12205 0.89 -1.4
2,653,158 - PS417_12205 0.89 -1.8
2,653,355 + +0.3
2,653,355 + -0.8
2,653,356 - -2.0
2,653,356 - -0.3
2,653,410 - -2.0
2,653,463 - -0.6
2,653,610 - PS417_12210 0.14 -0.3
2,653,652 - PS417_12210 0.16 +1.3
2,653,652 - PS417_12210 0.16 -0.5
2,653,738 + PS417_12210 0.21 -1.9
2,653,843 - +0.3
2,653,992 - PS417_12210 0.35 -0.1
2,654,090 - PS417_12210 0.40 -0.2
2,654,108 - PS417_12210 0.41 +0.2
2,654,329 + PS417_12210 0.53 -0.5
2,654,330 - PS417_12210 0.53 -0.4
2,654,330 - PS417_12210 0.53 +0.5
2,654,330 - PS417_12210 0.53 +1.3
2,654,330 - PS417_12210 0.53 -0.3
2,654,330 - PS417_12210 0.53 -0.2

Or see this region's nucleotide sequence