Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25350 and PS417_25355 are separated by 171 nucleotides PS417_25355 and PS417_25360 are separated by 97 nucleotides PS417_25360 and PS417_25365 are separated by 21 nucleotides
PS417_25350: PS417_25350 - biotin carboxylase, at 5,488,664 to 5,489,773
_25350
PS417_25355: PS417_25355 - AraC family transcriptional regulator, at 5,489,945 to 5,490,904
_25355
PS417_25360: PS417_25360 - Isochorismatase, at 5,491,002 to 5,491,565
_25360
PS417_25365: PS417_25365 - trans-aconitate methyltransferase, at 5,491,587 to 5,492,348
_25365
Position (kb) 5489
5490
5491 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5488.950 kb on + strand, within PS417_25350 at 5488.950 kb on + strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.951 kb on - strand, within PS417_25350 at 5488.962 kb on + strand, within PS417_25350 at 5489.015 kb on + strand, within PS417_25350 at 5489.039 kb on + strand, within PS417_25350 at 5489.040 kb on - strand, within PS417_25350 at 5489.052 kb on + strand, within PS417_25350 at 5489.052 kb on + strand, within PS417_25350 at 5489.053 kb on - strand, within PS417_25350 at 5489.122 kb on - strand, within PS417_25350 at 5489.122 kb on - strand, within PS417_25350 at 5489.148 kb on + strand, within PS417_25350 at 5489.149 kb on - strand, within PS417_25350 at 5489.343 kb on + strand, within PS417_25350 at 5489.344 kb on - strand, within PS417_25350 at 5489.604 kb on + strand, within PS417_25350 at 5489.604 kb on + strand, within PS417_25350 at 5489.637 kb on + strand, within PS417_25350 at 5489.637 kb on + strand, within PS417_25350 at 5489.638 kb on - strand, within PS417_25350 at 5489.745 kb on - strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.804 kb on + strand at 5489.805 kb on - strand at 5489.805 kb on - strand at 5489.805 kb on - strand at 5489.806 kb on + strand at 5489.806 kb on + strand at 5490.117 kb on + strand, within PS417_25355 at 5490.529 kb on + strand, within PS417_25355 at 5490.529 kb on + strand, within PS417_25355 at 5490.530 kb on - strand, within PS417_25355 at 5490.873 kb on + strand at 5490.874 kb on - strand at 5490.874 kb on - strand at 5490.874 kb on - strand at 5490.924 kb on - strand at 5490.961 kb on + strand at 5490.961 kb on + strand at 5490.961 kb on + strand at 5490.961 kb on + strand at 5490.966 kb on + strand at 5490.966 kb on + strand at 5490.967 kb on - strand at 5491.044 kb on + strand at 5491.044 kb on + strand at 5491.396 kb on - strand, within PS417_25360 at 5491.396 kb on - strand, within PS417_25360 at 5491.396 kb on - strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.485 kb on + strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.486 kb on - strand, within PS417_25360 at 5491.537 kb on - strand at 5491.793 kb on - strand, within PS417_25365 at 5491.844 kb on - strand, within PS417_25365 at 5491.844 kb on - strand, within PS417_25365 at 5491.846 kb on + strand, within PS417_25365 at 5491.849 kb on + strand, within PS417_25365 at 5491.850 kb on - strand, within PS417_25365 at 5491.850 kb on - strand, within PS417_25365
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,488,950 + PS417_25350 0.26 -2.2 5,488,950 + PS417_25350 0.26 +1.3 5,488,951 - PS417_25350 0.26 -1.2 5,488,951 - PS417_25350 0.26 -0.4 5,488,951 - PS417_25350 0.26 -2.4 5,488,951 - PS417_25350 0.26 -0.4 5,488,962 + PS417_25350 0.27 -1.0 5,489,015 + PS417_25350 0.32 -0.1 5,489,039 + PS417_25350 0.34 -0.8 5,489,040 - PS417_25350 0.34 -1.4 5,489,052 + PS417_25350 0.35 +0.2 5,489,052 + PS417_25350 0.35 +0.3 5,489,053 - PS417_25350 0.35 -0.0 5,489,122 - PS417_25350 0.41 -0.8 5,489,122 - PS417_25350 0.41 -0.3 5,489,148 + PS417_25350 0.44 +0.9 5,489,149 - PS417_25350 0.44 -1.3 5,489,343 + PS417_25350 0.61 +0.3 5,489,344 - PS417_25350 0.61 -0.4 5,489,604 + PS417_25350 0.85 +0.4 5,489,604 + PS417_25350 0.85 +1.2 5,489,637 + PS417_25350 0.88 -0.0 5,489,637 + PS417_25350 0.88 +0.3 5,489,638 - PS417_25350 0.88 -0.3 5,489,745 - +0.2 5,489,804 + -0.5 5,489,804 + -0.2 5,489,804 + +1.2 5,489,804 + -1.8 5,489,805 - -0.4 5,489,805 - -0.1 5,489,805 - +0.8 5,489,806 + -0.3 5,489,806 + +1.0 5,490,117 + PS417_25355 0.18 +0.4 5,490,529 + PS417_25355 0.61 -0.1 5,490,529 + PS417_25355 0.61 +3.8 5,490,530 - PS417_25355 0.61 -0.4 5,490,873 + -0.8 5,490,874 - +0.3 5,490,874 - -1.9 5,490,874 - +0.9 5,490,924 - +0.2 5,490,961 + +0.7 5,490,961 + -0.7 5,490,961 + +0.2 5,490,961 + +1.0 5,490,966 + +0.1 5,490,966 + -0.5 5,490,967 - -0.2 5,491,044 + +0.2 5,491,044 + -0.7 5,491,396 - PS417_25360 0.70 -0.0 5,491,396 - PS417_25360 0.70 +1.0 5,491,396 - PS417_25360 0.70 -0.2 5,491,485 + PS417_25360 0.86 +0.1 5,491,485 + PS417_25360 0.86 -1.2 5,491,485 + PS417_25360 0.86 -0.6 5,491,485 + PS417_25360 0.86 +1.6 5,491,486 - PS417_25360 0.86 -0.3 5,491,486 - PS417_25360 0.86 +0.1 5,491,486 - PS417_25360 0.86 -0.1 5,491,486 - PS417_25360 0.86 +1.2 5,491,486 - PS417_25360 0.86 +0.0 5,491,537 - -0.8 5,491,793 - PS417_25365 0.27 -0.4 5,491,844 - PS417_25365 0.34 +0.8 5,491,844 - PS417_25365 0.34 -2.3 5,491,846 + PS417_25365 0.34 +1.0 5,491,849 + PS417_25365 0.34 -0.3 5,491,850 - PS417_25365 0.35 -0.0 5,491,850 - PS417_25365 0.35 +0.4
Or see this region's nucleotide sequence