Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01560 and PS417_01565 overlap by 1 nucleotides PS417_01565 and PS417_01570 are separated by 0 nucleotides PS417_01570 and PS417_01575 are separated by 39 nucleotides PS417_01575 and PS417_01580 are separated by 9 nucleotides
PS417_01560: PS417_01560 - imidazoleglycerol-phosphate dehydratase, at 346,158 to 346,751
_01560
PS417_01565: PS417_01565 - imidazole glycerol phosphate synthase, at 346,751 to 347,389
_01565
PS417_01570: PS417_01570 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase, at 347,390 to 347,647
_01570
PS417_01575: PS417_01575 - 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) <small>(from data)</small>, at 347,687 to 348,424
_01575
PS417_01580: PS417_01580 - imidazole glycerol phosphate synthase, at 348,434 to 349,204
_01580
Position (kb) 347
348 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 346.406 kb on + strand, within PS417_01560 at 346.407 kb on - strand, within PS417_01560 at 346.446 kb on + strand, within PS417_01560 at 346.446 kb on + strand, within PS417_01560 at 346.524 kb on + strand, within PS417_01560 at 346.822 kb on - strand, within PS417_01565 at 347.216 kb on + strand, within PS417_01565 at 347.216 kb on + strand, within PS417_01565 at 347.217 kb on - strand, within PS417_01565 at 347.492 kb on - strand, within PS417_01570 at 347.558 kb on + strand, within PS417_01570 at 347.559 kb on - strand, within PS417_01570 at 347.730 kb on + strand at 347.806 kb on - strand, within PS417_01575 at 347.964 kb on - strand, within PS417_01575 at 347.985 kb on - strand, within PS417_01575 at 348.365 kb on + strand at 348.365 kb on + strand at 348.366 kb on - strand at 348.414 kb on - strand at 348.578 kb on - strand, within PS417_01580 at 348.578 kb on - strand, within PS417_01580
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 346,406 + PS417_01560 0.42 -0.8 346,407 - PS417_01560 0.42 -2.3 346,446 + PS417_01560 0.48 -0.8 346,446 + PS417_01560 0.48 -0.2 346,524 + PS417_01560 0.62 -0.2 346,822 - PS417_01565 0.11 -1.7 347,216 + PS417_01565 0.73 -1.0 347,216 + PS417_01565 0.73 -1.9 347,217 - PS417_01565 0.73 -1.8 347,492 - PS417_01570 0.40 -0.7 347,558 + PS417_01570 0.65 -0.3 347,559 - PS417_01570 0.66 -1.4 347,730 + -0.9 347,806 - PS417_01575 0.16 -1.4 347,964 - PS417_01575 0.38 -2.0 347,985 - PS417_01575 0.40 -2.1 348,365 + -3.3 348,365 + +0.2 348,366 - -2.8 348,414 - -1.4 348,578 - PS417_01580 0.19 -2.2 348,578 - PS417_01580 0.19 +1.2
Or see this region's nucleotide sequence