Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03430 and PS417_03435 overlap by 4 nucleotides PS417_03435 and PS417_03445 are separated by 566 nucleotides PS417_03445 and PS417_03450 are separated by 191 nucleotides
PS417_03430: PS417_03430 - methyltransferase type 11, at 789,520 to 790,326
_03430
PS417_03435: PS417_03435 - cytochrome P450, at 790,323 to 792,323
_03435
PS417_03445: PS417_03445 - tRNA-Met, at 792,890 to 792,966
_03445
PS417_03450: PS417_03450 - RNA polymerase sigma factor, at 793,158 to 793,709
_03450
Position (kb) 790
791
792
793 Strain fitness (log2 ratio) -2
-1
0
1
2 at 789.631 kb on + strand, within PS417_03430 at 789.632 kb on - strand, within PS417_03430 at 789.669 kb on + strand, within PS417_03430 at 789.670 kb on - strand, within PS417_03430 at 790.253 kb on + strand at 790.253 kb on - strand at 790.253 kb on - strand at 790.280 kb on + strand at 790.281 kb on - strand at 790.281 kb on - strand at 790.281 kb on - strand at 790.419 kb on + strand at 790.532 kb on + strand, within PS417_03435 at 790.532 kb on + strand, within PS417_03435 at 790.533 kb on - strand, within PS417_03435 at 791.018 kb on - strand, within PS417_03435 at 791.055 kb on + strand, within PS417_03435 at 791.245 kb on - strand, within PS417_03435 at 791.323 kb on + strand at 791.444 kb on - strand, within PS417_03435 at 791.444 kb on - strand, within PS417_03435 at 791.444 kb on - strand, within PS417_03435 at 791.959 kb on + strand, within PS417_03435 at 792.207 kb on + strand at 792.466 kb on - strand at 792.466 kb on - strand at 792.466 kb on - strand at 792.633 kb on + strand at 792.634 kb on - strand at 792.634 kb on - strand at 793.235 kb on + strand, within PS417_03450 at 793.294 kb on + strand, within PS417_03450
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 789,631 + PS417_03430 0.14 +1.5 789,632 - PS417_03430 0.14 -0.4 789,669 + PS417_03430 0.18 -0.9 789,670 - PS417_03430 0.19 -0.7 790,253 + -0.9 790,253 - -1.7 790,253 - +1.4 790,280 + -0.6 790,281 - +2.0 790,281 - -0.6 790,281 - +1.4 790,419 + -0.0 790,532 + PS417_03435 0.10 -0.5 790,532 + PS417_03435 0.10 -1.3 790,533 - PS417_03435 0.10 -2.5 791,018 - PS417_03435 0.35 -0.5 791,055 + PS417_03435 0.37 -1.0 791,245 - PS417_03435 0.46 -0.6 791,323 + +0.4 791,444 - PS417_03435 0.56 -1.9 791,444 - PS417_03435 0.56 -0.2 791,444 - PS417_03435 0.56 -1.6 791,959 + PS417_03435 0.82 -0.2 792,207 + -0.0 792,466 - +0.4 792,466 - +2.1 792,466 - +2.0 792,633 + -1.0 792,634 - -0.5 792,634 - -1.4 793,235 + PS417_03450 0.14 +0.3 793,294 + PS417_03450 0.25 +1.0
Or see this region's nucleotide sequence