Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03310 and PS417_03315 overlap by 4 nucleotides PS417_03315 and PS417_03320 are separated by 143 nucleotides PS417_03320 and PS417_03325 are separated by 122 nucleotides
PS417_03310: PS417_03310 - carbonate dehydratase, at 758,238 to 758,882
_03310
PS417_03315: PS417_03315 - hypothetical protein, at 758,879 to 759,406
_03315
PS417_03320: PS417_03320 - hypothetical protein, at 759,550 to 760,719
_03320
PS417_03325: PS417_03325 - acid phosphatase, at 760,842 to 762,542
_03325
Position (kb) 759
760
761 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 758.617 kb on - strand, within PS417_03310 at 758.619 kb on + strand, within PS417_03310 at 758.781 kb on + strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.782 kb on - strand, within PS417_03310 at 758.880 kb on + strand at 759.150 kb on + strand, within PS417_03315 at 759.208 kb on - strand, within PS417_03315 at 759.230 kb on + strand, within PS417_03315 at 759.230 kb on + strand, within PS417_03315 at 759.231 kb on - strand, within PS417_03315 at 759.231 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.291 kb on - strand, within PS417_03315 at 759.379 kb on + strand at 759.380 kb on - strand at 759.406 kb on + strand at 759.406 kb on + strand at 759.407 kb on - strand at 759.420 kb on + strand at 759.421 kb on - strand at 759.452 kb on - strand at 759.509 kb on + strand at 759.678 kb on - strand, within PS417_03320 at 759.858 kb on - strand, within PS417_03320 at 759.858 kb on - strand, within PS417_03320 at 759.879 kb on - strand, within PS417_03320 at 760.076 kb on + strand, within PS417_03320 at 760.088 kb on + strand, within PS417_03320 at 760.266 kb on - strand, within PS417_03320 at 760.344 kb on + strand, within PS417_03320 at 760.344 kb on + strand, within PS417_03320 at 760.345 kb on - strand, within PS417_03320 at 760.346 kb on + strand, within PS417_03320 at 760.538 kb on + strand, within PS417_03320 at 760.719 kb on + strand at 760.719 kb on + strand at 760.806 kb on + strand at 760.987 kb on + strand at 761.249 kb on - strand, within PS417_03325 at 761.384 kb on - strand, within PS417_03325 at 761.611 kb on + strand, within PS417_03325
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 758,617 - PS417_03310 0.59 -0.9 758,619 + PS417_03310 0.59 +0.4 758,781 + PS417_03310 0.84 -0.9 758,782 - PS417_03310 0.84 -1.4 758,782 - PS417_03310 0.84 -0.4 758,880 + +1.1 759,150 + PS417_03315 0.51 -1.9 759,208 - PS417_03315 0.62 -0.9 759,230 + PS417_03315 0.66 +0.2 759,230 + PS417_03315 0.66 -1.3 759,231 - PS417_03315 0.67 +1.5 759,231 - PS417_03315 0.67 -0.1 759,291 - PS417_03315 0.78 -1.5 759,291 - PS417_03315 0.78 +0.9 759,291 - PS417_03315 0.78 -0.1 759,291 - PS417_03315 0.78 -0.4 759,379 + -0.1 759,380 - -1.0 759,406 + +0.2 759,406 + +0.5 759,407 - +2.8 759,420 + -1.4 759,421 - +0.9 759,452 - -0.1 759,509 + -0.6 759,678 - PS417_03320 0.11 -0.6 759,858 - PS417_03320 0.26 -0.4 759,858 - PS417_03320 0.26 -0.1 759,879 - PS417_03320 0.28 -1.1 760,076 + PS417_03320 0.45 -0.5 760,088 + PS417_03320 0.46 +0.4 760,266 - PS417_03320 0.61 -0.8 760,344 + PS417_03320 0.68 -0.4 760,344 + PS417_03320 0.68 -0.1 760,345 - PS417_03320 0.68 +0.3 760,346 + PS417_03320 0.68 -1.6 760,538 + PS417_03320 0.84 -0.3 760,719 + -0.1 760,719 + -1.1 760,806 + +0.9 760,987 + -0.5 761,249 - PS417_03325 0.24 -0.7 761,384 - PS417_03325 0.32 +0.9 761,611 + PS417_03325 0.45 -0.4
Or see this region's nucleotide sequence