Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26095 and PS417_26100 are separated by 8 nucleotides PS417_26100 and PS417_26105 are separated by 65 nucleotides PS417_26105 and PS417_26110 overlap by 4 nucleotides PS417_26110 and PS417_26115 are separated by 107 nucleotides
PS417_26095: PS417_26095 - ornithine cyclodeaminase, at 5,641,115 to 5,642,143
_26095
PS417_26100: PS417_26100 - amino acid ABC transporter, at 5,642,152 to 5,642,913
_26100
PS417_26105: PS417_26105 - ABC transporter permease, at 5,642,979 to 5,643,698
_26105
PS417_26110: PS417_26110 - ABC transporter permease, at 5,643,695 to 5,644,405
_26110
PS417_26115: PS417_26115 - glutamine ABC transporter ATP-binding protein, at 5,644,513 to 5,645,238
_26115
Position (kb) 5642
5643
5644 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5642.093 kb on - strand at 5642.131 kb on - strand at 5642.136 kb on + strand at 5642.137 kb on - strand at 5642.142 kb on - strand at 5642.145 kb on + strand at 5642.272 kb on + strand, within PS417_26100 at 5642.480 kb on - strand, within PS417_26100 at 5642.572 kb on + strand, within PS417_26100 at 5642.573 kb on - strand, within PS417_26100 at 5642.591 kb on - strand, within PS417_26100 at 5642.591 kb on - strand, within PS417_26100 at 5642.605 kb on + strand, within PS417_26100 at 5642.606 kb on - strand, within PS417_26100 at 5642.705 kb on - strand, within PS417_26100 at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.869 kb on + strand at 5642.870 kb on - strand at 5642.870 kb on - strand at 5642.871 kb on + strand at 5642.871 kb on + strand at 5642.871 kb on + strand at 5642.872 kb on - strand at 5642.890 kb on + strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.909 kb on - strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.992 kb on + strand at 5642.993 kb on - strand at 5642.993 kb on - strand at 5643.160 kb on + strand, within PS417_26105 at 5643.213 kb on + strand, within PS417_26105 at 5643.214 kb on - strand, within PS417_26105 at 5643.216 kb on + strand, within PS417_26105 at 5643.217 kb on - strand, within PS417_26105 at 5643.540 kb on - strand, within PS417_26105 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.890 kb on + strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.891 kb on - strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.892 kb on + strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.893 kb on - strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.896 kb on + strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.897 kb on - strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.941 kb on + strand, within PS417_26110 at 5643.945 kb on - strand, within PS417_26110 at 5643.981 kb on + strand, within PS417_26110 at 5643.982 kb on - strand, within PS417_26110 at 5643.982 kb on - strand, within PS417_26110 at 5644.053 kb on - strand, within PS417_26110 at 5644.311 kb on - strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.331 kb on + strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.332 kb on - strand, within PS417_26110 at 5644.366 kb on + strand at 5644.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,642,093 - +2.0 5,642,131 - +0.5 5,642,136 + +0.4 5,642,137 - +1.0 5,642,142 - +0.4 5,642,145 + +0.6 5,642,272 + PS417_26100 0.16 +2.0 5,642,480 - PS417_26100 0.43 -1.2 5,642,572 + PS417_26100 0.55 +0.0 5,642,573 - PS417_26100 0.55 -0.2 5,642,591 - PS417_26100 0.58 +0.5 5,642,591 - PS417_26100 0.58 +0.7 5,642,605 + PS417_26100 0.59 +1.1 5,642,606 - PS417_26100 0.60 -0.3 5,642,705 - PS417_26100 0.73 +1.0 5,642,869 + +0.5 5,642,869 + +0.8 5,642,869 + +0.4 5,642,869 + +0.3 5,642,869 + +1.1 5,642,869 + -1.6 5,642,870 - -0.1 5,642,870 - -0.7 5,642,871 + -1.8 5,642,871 + -0.2 5,642,871 + -0.1 5,642,872 - -1.0 5,642,890 + +0.5 5,642,909 - +0.8 5,642,909 - -0.3 5,642,909 - +0.1 5,642,909 - +0.0 5,642,909 - -1.8 5,642,992 + -1.4 5,642,992 + +0.6 5,642,992 + +1.2 5,642,992 + -0.4 5,642,993 - +0.4 5,642,993 - +0.2 5,643,160 + PS417_26105 0.25 +0.7 5,643,213 + PS417_26105 0.33 -0.3 5,643,214 - PS417_26105 0.33 +0.2 5,643,216 + PS417_26105 0.33 +0.4 5,643,217 - PS417_26105 0.33 -0.2 5,643,540 - PS417_26105 0.78 -0.1 5,643,890 + PS417_26110 0.27 -2.0 5,643,890 + PS417_26110 0.27 +0.0 5,643,890 + PS417_26110 0.27 -0.7 5,643,890 + PS417_26110 0.27 +1.7 5,643,890 + PS417_26110 0.27 -1.3 5,643,890 + PS417_26110 0.27 +0.7 5,643,890 + PS417_26110 0.27 -0.3 5,643,890 + PS417_26110 0.27 +0.4 5,643,890 + PS417_26110 0.27 -0.5 5,643,890 + PS417_26110 0.27 +0.0 5,643,890 + PS417_26110 0.27 -0.2 5,643,890 + PS417_26110 0.27 +0.1 5,643,890 + PS417_26110 0.27 -2.1 5,643,890 + PS417_26110 0.27 +0.0 5,643,890 + PS417_26110 0.27 +0.0 5,643,890 + PS417_26110 0.27 -0.1 5,643,891 - PS417_26110 0.28 -0.5 5,643,891 - PS417_26110 0.28 +0.4 5,643,891 - PS417_26110 0.28 -0.8 5,643,891 - PS417_26110 0.28 -1.7 5,643,891 - PS417_26110 0.28 -1.0 5,643,891 - PS417_26110 0.28 -1.2 5,643,891 - PS417_26110 0.28 +0.2 5,643,891 - PS417_26110 0.28 -1.6 5,643,891 - PS417_26110 0.28 +3.6 5,643,892 + PS417_26110 0.28 -1.4 5,643,892 + PS417_26110 0.28 -1.2 5,643,892 + PS417_26110 0.28 +2.4 5,643,892 + PS417_26110 0.28 -2.2 5,643,892 + PS417_26110 0.28 +1.0 5,643,892 + PS417_26110 0.28 -0.1 5,643,892 + PS417_26110 0.28 -0.9 5,643,892 + PS417_26110 0.28 -1.2 5,643,892 + PS417_26110 0.28 +0.7 5,643,892 + PS417_26110 0.28 -0.7 5,643,893 - PS417_26110 0.28 +0.1 5,643,893 - PS417_26110 0.28 -0.6 5,643,893 - PS417_26110 0.28 +2.4 5,643,893 - PS417_26110 0.28 -1.8 5,643,896 + PS417_26110 0.28 -0.3 5,643,896 + PS417_26110 0.28 -1.1 5,643,897 - PS417_26110 0.28 -0.4 5,643,897 - PS417_26110 0.28 -0.2 5,643,897 - PS417_26110 0.28 +0.8 5,643,897 - PS417_26110 0.28 +1.0 5,643,941 + PS417_26110 0.35 -0.4 5,643,941 + PS417_26110 0.35 -0.1 5,643,941 + PS417_26110 0.35 -0.8 5,643,945 - PS417_26110 0.35 +0.4 5,643,981 + PS417_26110 0.40 +3.2 5,643,982 - PS417_26110 0.40 +0.4 5,643,982 - PS417_26110 0.40 -0.3 5,644,053 - PS417_26110 0.50 +0.1 5,644,311 - PS417_26110 0.87 +1.6 5,644,331 + PS417_26110 0.89 -0.5 5,644,331 + PS417_26110 0.89 -1.2 5,644,331 + PS417_26110 0.89 -0.1 5,644,332 - PS417_26110 0.90 -1.6 5,644,332 - PS417_26110 0.90 -0.5 5,644,332 - PS417_26110 0.90 -0.9 5,644,366 + -0.2 5,644,559 + +1.3
Or see this region's nucleotide sequence