Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25275 and PS417_25280 overlap by 4 nucleotides PS417_25280 and PS417_25285 are separated by 151 nucleotides PS417_25285 and PS417_25290 overlap by 4 nucleotides PS417_25290 and PS417_25295 are separated by 130 nucleotides
PS417_25275: PS417_25275 - hypothetical protein, at 5,475,005 to 5,475,460
_25275
PS417_25280: PS417_25280 - methyltransferase, at 5,475,457 to 5,476,113
_25280
PS417_25285: PS417_25285 - thioredoxin, at 5,476,265 to 5,477,137
_25285
PS417_25290: PS417_25290 - hypothetical protein, at 5,477,134 to 5,477,481
_25290
PS417_25295: PS417_25295 - hypothetical protein, at 5,477,612 to 5,478,214
_25295
Position (kb) 5476
5477
5478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5475.267 kb on + strand, within PS417_25275 at 5475.267 kb on + strand, within PS417_25275 at 5475.268 kb on - strand, within PS417_25275 at 5475.552 kb on - strand, within PS417_25280 at 5475.671 kb on - strand, within PS417_25280 at 5475.853 kb on + strand, within PS417_25280 at 5475.916 kb on + strand, within PS417_25280 at 5475.916 kb on + strand, within PS417_25280 at 5476.085 kb on + strand at 5476.086 kb on - strand at 5476.093 kb on + strand at 5476.228 kb on + strand at 5476.230 kb on + strand at 5476.230 kb on + strand at 5476.230 kb on + strand at 5476.231 kb on - strand at 5476.231 kb on - strand at 5476.231 kb on - strand at 5476.231 kb on - strand at 5476.250 kb on + strand at 5476.250 kb on + strand at 5476.283 kb on + strand at 5476.283 kb on + strand at 5476.427 kb on + strand, within PS417_25285 at 5476.427 kb on + strand, within PS417_25285 at 5476.428 kb on - strand, within PS417_25285 at 5476.602 kb on + strand, within PS417_25285 at 5476.602 kb on + strand, within PS417_25285 at 5476.602 kb on + strand, within PS417_25285 at 5476.602 kb on + strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.603 kb on - strand, within PS417_25285 at 5476.718 kb on - strand, within PS417_25285 at 5476.941 kb on - strand, within PS417_25285 at 5477.027 kb on + strand, within PS417_25285 at 5477.118 kb on + strand at 5477.118 kb on + strand at 5477.119 kb on - strand at 5477.132 kb on + strand at 5477.135 kb on + strand at 5477.153 kb on + strand at 5477.153 kb on + strand at 5477.323 kb on + strand, within PS417_25290 at 5477.324 kb on - strand, within PS417_25290 at 5477.324 kb on - strand, within PS417_25290 at 5477.489 kb on - strand at 5477.572 kb on - strand at 5477.894 kb on - strand, within PS417_25295 at 5477.894 kb on - strand, within PS417_25295 at 5478.054 kb on - strand, within PS417_25295
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,475,267 + PS417_25275 0.57 -0.2 5,475,267 + PS417_25275 0.57 +0.4 5,475,268 - PS417_25275 0.58 -0.4 5,475,552 - PS417_25280 0.14 -0.2 5,475,671 - PS417_25280 0.33 +0.0 5,475,853 + PS417_25280 0.60 -0.7 5,475,916 + PS417_25280 0.70 +0.2 5,475,916 + PS417_25280 0.70 +0.4 5,476,085 + +1.1 5,476,086 - -1.4 5,476,093 + +0.4 5,476,228 + -0.0 5,476,230 + +2.6 5,476,230 + +0.2 5,476,230 + +0.4 5,476,231 - -0.4 5,476,231 - -1.9 5,476,231 - -0.8 5,476,231 - -0.6 5,476,250 + -1.4 5,476,250 + -0.6 5,476,283 + -0.0 5,476,283 + -0.1 5,476,427 + PS417_25285 0.19 -0.4 5,476,427 + PS417_25285 0.19 -0.3 5,476,428 - PS417_25285 0.19 -1.1 5,476,602 + PS417_25285 0.39 -0.7 5,476,602 + PS417_25285 0.39 -0.0 5,476,602 + PS417_25285 0.39 +1.4 5,476,602 + PS417_25285 0.39 -0.4 5,476,603 - PS417_25285 0.39 -0.1 5,476,603 - PS417_25285 0.39 -0.6 5,476,603 - PS417_25285 0.39 -0.9 5,476,603 - PS417_25285 0.39 -1.4 5,476,603 - PS417_25285 0.39 -1.0 5,476,603 - PS417_25285 0.39 -1.8 5,476,603 - PS417_25285 0.39 +1.5 5,476,603 - PS417_25285 0.39 -0.0 5,476,718 - PS417_25285 0.52 +0.6 5,476,941 - PS417_25285 0.77 -1.4 5,477,027 + PS417_25285 0.87 +0.1 5,477,118 + +0.2 5,477,118 + -0.7 5,477,119 - +0.0 5,477,132 + -0.4 5,477,135 + -0.7 5,477,153 + +0.6 5,477,153 + -0.0 5,477,323 + PS417_25290 0.54 +0.2 5,477,324 - PS417_25290 0.55 -1.6 5,477,324 - PS417_25290 0.55 +1.6 5,477,489 - +2.4 5,477,572 - -0.3 5,477,894 - PS417_25295 0.47 -0.9 5,477,894 - PS417_25295 0.47 -0.6 5,478,054 - PS417_25295 0.73 -0.7
Or see this region's nucleotide sequence