Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_25160 and PS417_25165 are separated by 400 nucleotides PS417_25165 and PS417_25170 are separated by 280 nucleotides
PS417_25160: PS417_25160 - hypothetical protein, at 5,453,412 to 5,453,945
_25160
PS417_25165: PS417_25165 - chitin-binding protein, at 5,454,346 to 5,454,981
_25165
PS417_25170: PS417_25170 - FAD-binding protein, at 5,455,262 to 5,456,950
_25170
Position (kb) 5454
5455 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5453.475 kb on + strand, within PS417_25160 at 5453.488 kb on + strand, within PS417_25160 at 5453.552 kb on + strand, within PS417_25160 at 5453.618 kb on + strand, within PS417_25160 at 5453.618 kb on + strand, within PS417_25160 at 5453.646 kb on + strand, within PS417_25160 at 5453.672 kb on - strand at 5453.722 kb on + strand, within PS417_25160 at 5453.722 kb on + strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.723 kb on - strand, within PS417_25160 at 5453.756 kb on + strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.757 kb on - strand, within PS417_25160 at 5453.758 kb on + strand, within PS417_25160 at 5453.758 kb on + strand, within PS417_25160 at 5453.758 kb on + strand, within PS417_25160 at 5453.759 kb on - strand, within PS417_25160 at 5453.759 kb on - strand, within PS417_25160 at 5453.784 kb on + strand, within PS417_25160 at 5453.802 kb on - strand, within PS417_25160 at 5453.837 kb on + strand, within PS417_25160 at 5453.861 kb on + strand, within PS417_25160 at 5453.862 kb on - strand, within PS417_25160 at 5453.948 kb on + strand at 5453.966 kb on + strand at 5453.970 kb on - strand at 5454.138 kb on + strand at 5454.150 kb on - strand at 5454.150 kb on - strand at 5454.221 kb on - strand at 5454.331 kb on + strand at 5454.525 kb on - strand at 5454.615 kb on + strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.771 kb on - strand, within PS417_25165 at 5454.801 kb on + strand, within PS417_25165 at 5454.975 kb on + strand at 5454.976 kb on - strand at 5455.022 kb on + strand at 5455.048 kb on + strand at 5455.049 kb on - strand at 5455.086 kb on + strand at 5455.087 kb on - strand at 5455.087 kb on - strand at 5455.097 kb on + strand at 5455.100 kb on - strand at 5455.148 kb on + strand at 5455.392 kb on + strand at 5455.392 kb on + strand at 5455.396 kb on + strand at 5455.397 kb on - strand at 5455.397 kb on - strand at 5455.397 kb on - strand at 5455.481 kb on + strand, within PS417_25170 at 5455.482 kb on - strand, within PS417_25170 at 5455.622 kb on - strand, within PS417_25170 at 5455.625 kb on + strand, within PS417_25170 at 5455.661 kb on + strand, within PS417_25170 at 5455.673 kb on + strand, within PS417_25170 at 5455.695 kb on + strand, within PS417_25170 at 5455.846 kb on - strand, within PS417_25170
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,453,475 + PS417_25160 0.12 +0.4 5,453,488 + PS417_25160 0.14 +1.0 5,453,552 + PS417_25160 0.26 +0.2 5,453,618 + PS417_25160 0.39 -1.7 5,453,618 + PS417_25160 0.39 +0.4 5,453,646 + PS417_25160 0.44 -0.9 5,453,672 - +2.0 5,453,722 + PS417_25160 0.58 -1.0 5,453,722 + PS417_25160 0.58 -0.9 5,453,723 - PS417_25160 0.58 -0.3 5,453,723 - PS417_25160 0.58 +0.5 5,453,723 - PS417_25160 0.58 +0.7 5,453,723 - PS417_25160 0.58 +0.1 5,453,756 + PS417_25160 0.64 +0.2 5,453,757 - PS417_25160 0.65 -2.0 5,453,757 - PS417_25160 0.65 -0.9 5,453,757 - PS417_25160 0.65 +0.5 5,453,757 - PS417_25160 0.65 +0.1 5,453,758 + PS417_25160 0.65 +0.2 5,453,758 + PS417_25160 0.65 -1.0 5,453,758 + PS417_25160 0.65 -3.1 5,453,759 - PS417_25160 0.65 +0.7 5,453,759 - PS417_25160 0.65 -1.4 5,453,784 + PS417_25160 0.70 +0.7 5,453,802 - PS417_25160 0.73 +0.1 5,453,837 + PS417_25160 0.80 -1.2 5,453,861 + PS417_25160 0.84 +3.8 5,453,862 - PS417_25160 0.84 -0.5 5,453,948 + +0.2 5,453,966 + +0.2 5,453,970 - -0.3 5,454,138 + +0.5 5,454,150 - -2.7 5,454,150 - -1.9 5,454,221 - +1.5 5,454,331 + +2.1 5,454,525 - +1.0 5,454,615 + PS417_25165 0.42 -0.5 5,454,771 - PS417_25165 0.67 -1.1 5,454,771 - PS417_25165 0.67 -0.5 5,454,771 - PS417_25165 0.67 -0.3 5,454,771 - PS417_25165 0.67 -1.5 5,454,801 + PS417_25165 0.72 -0.5 5,454,975 + -2.8 5,454,976 - -0.5 5,455,022 + +1.9 5,455,048 + -0.1 5,455,049 - +1.0 5,455,086 + -0.6 5,455,087 - -2.6 5,455,087 - -0.9 5,455,097 + -0.6 5,455,100 - -0.6 5,455,148 + +1.0 5,455,392 + -0.0 5,455,392 + -1.6 5,455,396 + +1.2 5,455,397 - -1.0 5,455,397 - -0.3 5,455,397 - -0.6 5,455,481 + PS417_25170 0.13 +0.9 5,455,482 - PS417_25170 0.13 +1.8 5,455,622 - PS417_25170 0.21 +1.4 5,455,625 + PS417_25170 0.21 -1.5 5,455,661 + PS417_25170 0.24 -1.9 5,455,673 + PS417_25170 0.24 -0.3 5,455,695 + PS417_25170 0.26 -0.2 5,455,846 - PS417_25170 0.35 -1.2
Or see this region's nucleotide sequence