Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21915 and PS417_21920 overlap by 4 nucleotides PS417_21920 and PS417_21925 are separated by 106 nucleotides PS417_21925 and PS417_21930 are separated by 81 nucleotides
PS417_21915: PS417_21915 - LysR family transcriptional regulator, at 4,756,107 to 4,757,024
_21915
PS417_21920: PS417_21920 - transcriptional regulator, at 4,757,021 to 4,757,917
_21920
PS417_21925: PS417_21925 - short-chain dehydrogenase, at 4,758,024 to 4,758,782
_21925
PS417_21930: PS417_21930 - membrane protein, at 4,758,864 to 4,759,328
_21930
Position (kb) 4757
4758 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6
7 at 4756.101 kb on - strand at 4756.134 kb on + strand at 4756.318 kb on - strand, within PS417_21915 at 4756.420 kb on - strand, within PS417_21915 at 4756.683 kb on + strand, within PS417_21915 at 4756.684 kb on - strand, within PS417_21915 at 4756.684 kb on - strand, within PS417_21915 at 4756.975 kb on - strand at 4757.145 kb on - strand, within PS417_21920 at 4757.180 kb on + strand at 4757.339 kb on + strand, within PS417_21920 at 4757.340 kb on - strand, within PS417_21920 at 4757.340 kb on - strand, within PS417_21920 at 4757.343 kb on + strand, within PS417_21920 at 4757.343 kb on + strand, within PS417_21920 at 4757.343 kb on + strand, within PS417_21920 at 4757.343 kb on + strand, within PS417_21920 at 4757.344 kb on - strand, within PS417_21920 at 4757.344 kb on - strand, within PS417_21920 at 4757.344 kb on - strand, within PS417_21920 at 4757.395 kb on - strand, within PS417_21920 at 4757.437 kb on + strand, within PS417_21920 at 4757.620 kb on + strand, within PS417_21920 at 4757.721 kb on + strand, within PS417_21920 at 4757.721 kb on + strand, within PS417_21920 at 4757.721 kb on + strand, within PS417_21920 at 4757.721 kb on + strand, within PS417_21920 at 4757.825 kb on - strand, within PS417_21920 at 4757.982 kb on + strand at 4758.044 kb on + strand at 4758.044 kb on + strand at 4758.045 kb on - strand at 4758.124 kb on - strand, within PS417_21925 at 4758.268 kb on + strand, within PS417_21925 at 4758.268 kb on + strand, within PS417_21925 at 4758.269 kb on - strand, within PS417_21925 at 4758.446 kb on + strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.447 kb on - strand, within PS417_21925 at 4758.493 kb on - strand, within PS417_21925 at 4758.894 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,756,101 - -0.4 4,756,134 + -0.3 4,756,318 - PS417_21915 0.23 +0.1 4,756,420 - PS417_21915 0.34 -1.2 4,756,683 + PS417_21915 0.63 -0.9 4,756,684 - PS417_21915 0.63 +2.0 4,756,684 - PS417_21915 0.63 +0.0 4,756,975 - -0.6 4,757,145 - PS417_21920 0.14 +0.2 4,757,180 + +2.6 4,757,339 + PS417_21920 0.35 -0.6 4,757,340 - PS417_21920 0.36 -1.6 4,757,340 - PS417_21920 0.36 -1.7 4,757,343 + PS417_21920 0.36 -0.6 4,757,343 + PS417_21920 0.36 -0.2 4,757,343 + PS417_21920 0.36 -0.0 4,757,343 + PS417_21920 0.36 +1.4 4,757,344 - PS417_21920 0.36 +0.3 4,757,344 - PS417_21920 0.36 +0.0 4,757,344 - PS417_21920 0.36 -0.2 4,757,395 - PS417_21920 0.42 -1.0 4,757,437 + PS417_21920 0.46 +0.3 4,757,620 + PS417_21920 0.67 +0.3 4,757,721 + PS417_21920 0.78 -0.8 4,757,721 + PS417_21920 0.78 +0.2 4,757,721 + PS417_21920 0.78 -1.3 4,757,721 + PS417_21920 0.78 -1.0 4,757,825 - PS417_21920 0.90 +6.8 4,757,982 + -0.7 4,758,044 + -1.6 4,758,044 + -0.6 4,758,045 - +0.4 4,758,124 - PS417_21925 0.13 +0.9 4,758,268 + PS417_21925 0.32 +0.3 4,758,268 + PS417_21925 0.32 +0.8 4,758,269 - PS417_21925 0.32 +0.5 4,758,446 + PS417_21925 0.56 -0.4 4,758,447 - PS417_21925 0.56 -0.3 4,758,447 - PS417_21925 0.56 -0.6 4,758,493 - PS417_21925 0.62 -1.8 4,758,894 - -1.6
Or see this region's nucleotide sequence