Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02120 and PS417_02125 are separated by 304 nucleotides PS417_02125 and PS417_02130 are separated by 484 nucleotides
PS417_02115: PS417_02115 - acyltransferase, at 471,779 to 472,591
_02115
PS417_02120: PS417_02120 - 3-oxoacyl-ACP synthase, at 472,567 to 473,286
_02120
PS417_02125: PS417_02125 - cobalamin biosynthesis protein CobQ, at 473,591 to 474,361
_02125
PS417_02130: PS417_02130 - hypothetical protein, at 474,846 to 475,064
_02130
Position (kb) 473
474
475 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 473.296 kb on - strand at 473.397 kb on - strand at 473.403 kb on + strand at 473.403 kb on + strand at 473.448 kb on + strand at 473.449 kb on - strand at 473.554 kb on + strand at 473.575 kb on - strand at 473.575 kb on - strand at 473.726 kb on + strand at 473.726 kb on + strand, within PS417_02125 at 473.752 kb on + strand, within PS417_02125 at 473.755 kb on - strand, within PS417_02125 at 473.824 kb on - strand, within PS417_02125 at 473.824 kb on - strand, within PS417_02125 at 473.827 kb on + strand, within PS417_02125 at 473.828 kb on - strand, within PS417_02125 at 473.828 kb on - strand, within PS417_02125 at 473.828 kb on - strand, within PS417_02125 at 473.831 kb on + strand, within PS417_02125 at 473.832 kb on - strand, within PS417_02125 at 474.132 kb on + strand, within PS417_02125 at 474.132 kb on + strand, within PS417_02125 at 474.237 kb on - strand, within PS417_02125 at 474.237 kb on - strand, within PS417_02125 at 474.237 kb on - strand, within PS417_02125 at 474.311 kb on - strand at 474.311 kb on - strand at 474.431 kb on + strand at 474.431 kb on + strand at 474.431 kb on + strand at 474.432 kb on - strand at 474.479 kb on - strand at 474.556 kb on + strand at 474.557 kb on - strand at 474.557 kb on - strand at 474.567 kb on - strand at 474.653 kb on - strand at 474.678 kb on - strand at 474.704 kb on - strand at 474.710 kb on + strand at 474.710 kb on + strand at 474.710 kb on + strand at 474.711 kb on - strand at 474.711 kb on - strand at 474.712 kb on + strand at 474.712 kb on + strand at 474.712 kb on + strand at 474.712 kb on + strand at 474.713 kb on - strand at 474.713 kb on - strand at 474.775 kb on - strand at 474.793 kb on - strand at 474.806 kb on + strand at 474.852 kb on - strand at 474.852 kb on - strand at 475.057 kb on + strand at 475.058 kb on - strand at 475.111 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 473,296 - +0.6 473,397 - +2.1 473,403 + -1.1 473,403 + +1.9 473,448 + -0.1 473,449 - +0.8 473,554 + +0.5 473,575 - +0.5 473,575 - +0.2 473,726 + +0.1 473,726 + PS417_02125 0.18 -0.2 473,752 + PS417_02125 0.21 -0.1 473,755 - PS417_02125 0.21 -1.4 473,824 - PS417_02125 0.30 -0.3 473,824 - PS417_02125 0.30 -0.7 473,827 + PS417_02125 0.31 +6.0 473,828 - PS417_02125 0.31 +0.3 473,828 - PS417_02125 0.31 -0.9 473,828 - PS417_02125 0.31 -1.3 473,831 + PS417_02125 0.31 +0.4 473,832 - PS417_02125 0.31 +0.6 474,132 + PS417_02125 0.70 -0.7 474,132 + PS417_02125 0.70 -0.6 474,237 - PS417_02125 0.84 -0.4 474,237 - PS417_02125 0.84 -0.1 474,237 - PS417_02125 0.84 +0.2 474,311 - -0.9 474,311 - +1.6 474,431 + -1.7 474,431 + +0.6 474,431 + +0.2 474,432 - -0.3 474,479 - -0.5 474,556 + +0.1 474,557 - -0.7 474,557 - -0.4 474,567 - -0.1 474,653 - +2.1 474,678 - +0.0 474,704 - +0.2 474,710 + -0.3 474,710 + -0.5 474,710 + +0.8 474,711 - +3.8 474,711 - +0.2 474,712 + -0.6 474,712 + +1.3 474,712 + -2.5 474,712 + -0.4 474,713 - -0.2 474,713 - -0.1 474,775 - -0.1 474,793 - -0.5 474,806 + -2.5 474,852 - +0.1 474,852 - -0.4 475,057 + +0.5 475,058 - +2.5 475,111 + -0.1
Or see this region's nucleotide sequence