Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18450 and PS417_18455 are separated by 111 nucleotides PS417_18455 and PS417_18460 are separated by 42 nucleotides PS417_18460 and PS417_18465 overlap by 4 nucleotides
PS417_18450: PS417_18450 - hydrolase, at 4,013,037 to 4,013,807
_18450
PS417_18455: PS417_18455 - hypothetical protein, at 4,013,919 to 4,014,164
_18455
PS417_18460: PS417_18460 - transcriptional regulator, at 4,014,207 to 4,014,878
_18460
PS417_18465: PS417_18465 - histidine kinase, at 4,014,875 to 4,016,275
_18465
Position (kb) 4014
4015 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4013.383 kb on - strand, within PS417_18450 at 4013.440 kb on - strand, within PS417_18450 at 4013.518 kb on - strand, within PS417_18450 at 4013.518 kb on - strand, within PS417_18450 at 4013.559 kb on + strand at 4013.559 kb on + strand, within PS417_18450 at 4013.559 kb on + strand, within PS417_18450 at 4013.560 kb on - strand, within PS417_18450 at 4013.805 kb on + strand at 4013.806 kb on - strand at 4013.817 kb on + strand at 4013.817 kb on + strand at 4013.931 kb on - strand at 4014.054 kb on + strand, within PS417_18455 at 4014.055 kb on - strand, within PS417_18455 at 4014.090 kb on + strand, within PS417_18455 at 4014.220 kb on + strand at 4014.249 kb on + strand at 4014.279 kb on + strand, within PS417_18460 at 4014.465 kb on - strand, within PS417_18460 at 4014.660 kb on - strand, within PS417_18460 at 4014.894 kb on - strand at 4015.022 kb on + strand, within PS417_18465 at 4015.374 kb on - strand, within PS417_18465 at 4015.389 kb on - strand, within PS417_18465 at 4015.389 kb on - strand at 4015.389 kb on - strand, within PS417_18465 at 4015.716 kb on - strand, within PS417_18465
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,013,383 - PS417_18450 0.45 +0.2 4,013,440 - PS417_18450 0.52 +0.9 4,013,518 - PS417_18450 0.62 +0.1 4,013,518 - PS417_18450 0.62 +0.3 4,013,559 + +0.3 4,013,559 + PS417_18450 0.68 -0.1 4,013,559 + PS417_18450 0.68 -1.9 4,013,560 - PS417_18450 0.68 +0.1 4,013,805 + -1.5 4,013,806 - +0.3 4,013,817 + -1.4 4,013,817 + -0.5 4,013,931 - +0.6 4,014,054 + PS417_18455 0.55 -0.1 4,014,055 - PS417_18455 0.55 +2.5 4,014,090 + PS417_18455 0.70 -0.5 4,014,220 + -0.2 4,014,249 + -1.2 4,014,279 + PS417_18460 0.11 -0.4 4,014,465 - PS417_18460 0.38 +0.8 4,014,660 - PS417_18460 0.67 +0.0 4,014,894 - -0.9 4,015,022 + PS417_18465 0.10 -0.9 4,015,374 - PS417_18465 0.36 -1.4 4,015,389 - PS417_18465 0.37 -0.2 4,015,389 - +1.9 4,015,389 - PS417_18465 0.37 -2.6 4,015,716 - PS417_18465 0.60 -1.7
Or see this region's nucleotide sequence