Strain Fitness in Pseudomonas simiae WCS417 around PS417_13230

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_13225 and PS417_13230 overlap by 4 nucleotidesPS417_13230 and PS417_13235 overlap by 4 nucleotides PS417_13225: PS417_13225 - thiazolinyl imide reductase, at 2,891,727 to 2,892,872 _13225 PS417_13230: PS417_13230 - cytochrome P450, at 2,892,869 to 2,894,047 _13230 PS417_13235: PS417_13235 - siderophore biosynthesis protein, at 2,894,044 to 2,895,714 _13235 Position (kb) 2892 2893 2894 2895Strain fitness (log2 ratio) -1 0 1 2at 2892.010 kb on + strand, within PS417_13225at 2893.708 kb on - strand, within PS417_13230at 2894.269 kb on + strand, within PS417_13235at 2894.269 kb on + strand, within PS417_13235at 2894.270 kb on - strand, within PS417_13235at 2895.000 kb on + strand, within PS417_13235at 2895.019 kb on + strand, within PS417_13235at 2895.019 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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2,892,010 + PS417_13225 0.25 +0.4
2,893,708 - PS417_13230 0.71 -0.9
2,894,269 + PS417_13235 0.13 -1.5
2,894,269 + PS417_13235 0.13 -1.5
2,894,270 - PS417_13235 0.14 -0.8
2,895,000 + PS417_13235 0.57 -0.0
2,895,019 + PS417_13235 0.58 +0.3
2,895,019 + +2.0

Or see this region's nucleotide sequence