Strain Fitness in Pseudomonas simiae WCS417 around PS417_10770

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
2,298,875	+		PS417_10760	0.69	-0.3
2,299,009	+				-0.0
2,299,016	+				+0.1
2,299,039	+				+0.3
2,299,103	-		PS417_10765	0.14	+2.8
2,299,297	+		PS417_10765	0.47	+1.5
2,299,307	-		PS417_10765	0.49	-1.9
2,299,307	-		PS417_10765	0.49	+0.7
2,299,379	+		PS417_10765	0.61	-2.5
2,299,379	+		PS417_10765	0.61	-0.9
2,299,379	+		PS417_10765	0.61	-0.9
2,299,507	-		PS417_10765	0.83	+0.3
2,299,601	+				+2.1
2,299,601	+				-1.4
2,299,601	+				-1.4
2,299,602	-				+0.4
2,299,655	+				+1.0
2,299,655	+				+1.5
2,299,655	+				+2.2
2,299,656	-				-0.5
2,299,656	-				+1.1
2,299,656	-				+1.0
2,299,789	+				-0.4
2,299,797	+				+0.3
2,299,798	-				+1.0
2,299,798	-				+0.5
2,299,798	-				+0.4
2,299,827	+				+1.1
2,299,827	+				-2.0
2,299,828	-				+0.5
2,299,848	+				-0.5
2,299,848	+				-2.4
2,299,888	-				-0.7
2,300,033	-				-0.6
2,300,065	+				-0.4
2,300,065	+				-1.1
2,300,065	+				+0.0
2,300,066	-				-1.0
2,300,066	-				+0.6
2,300,066	-				-0.5
2,300,066	-				-0.1
2,300,155	+		PS417_10770	0.10	+0.3
2,300,155	+		PS417_10770	0.10	-2.0
2,300,155	+		PS417_10770	0.10	-0.9
2,300,155	+		PS417_10770	0.10	+1.0
2,300,156	-		PS417_10770	0.10	+0.1
2,300,156	-		PS417_10770	0.10	+1.1
2,300,156	-		PS417_10770	0.10	+0.2
2,300,156	-		PS417_10770	0.10	+0.8
2,300,156	-		PS417_10770	0.10	-0.5
2,300,156	-		PS417_10770	0.10	-1.4
2,300,156	-		PS417_10770	0.10	+0.1
2,300,259	-		PS417_10770	0.13	+0.1
2,300,286	+		PS417_10770	0.13	+0.2
2,300,287	-		PS417_10770	0.13	-0.1
2,300,287	-		PS417_10770	0.13	-0.4
2,300,310	-		PS417_10770	0.14	-1.7
2,300,310	-		PS417_10770	0.14	-0.3
2,300,338	-		PS417_10770	0.15	+0.6
2,300,449	-		PS417_10770	0.17	+0.1
2,300,480	-		PS417_10770	0.18	-1.0
2,300,523	+		PS417_10770	0.19	-0.4
2,300,755	+		PS417_10770	0.25	+0.4
2,300,755	+		PS417_10770	0.25	-0.5
2,300,775	+		PS417_10770	0.26	-0.2
2,300,819	-		PS417_10770	0.27	-0.4
2,300,819	-		PS417_10770	0.27	-0.0
2,300,929	-		PS417_10770	0.29	-1.1
2,301,035	+		PS417_10770	0.32	+0.4
2,301,036	-		PS417_10770	0.32	+0.4
2,301,039	+		PS417_10770	0.32	+1.2
2,301,056	+		PS417_10770	0.32	-1.1
2,301,056	+		PS417_10770	0.32	-0.6
2,301,057	-		PS417_10770	0.32	+1.0
2,301,212	+		PS417_10770	0.36	+1.2
2,301,213	-		PS417_10770	0.36	-0.1
2,301,213	-		PS417_10770	0.36	-0.3
2,301,213	-		PS417_10770	0.36	+0.2
2,301,292	-		PS417_10770	0.38	-0.0
2,301,292	-		PS417_10770	0.38	+0.8
2,301,352	-		PS417_10770	0.40	-1.4
2,301,383	+		PS417_10770	0.41	-0.5
2,301,386	+		PS417_10770	0.41	+0.2
2,301,387	-		PS417_10770	0.41	+0.3
2,301,469	-		PS417_10770	0.43	-2.6
2,301,529	+		PS417_10770	0.44	+0.1
2,301,529	+		PS417_10770	0.44	-0.3
2,301,609	+		PS417_10770	0.46	-1.0
2,301,610	-		PS417_10770	0.46	-0.4
2,301,642	+		PS417_10770	0.47	-1.0
2,301,642	+		PS417_10770	0.47	-0.5
2,301,643	-				+3.5
2,301,739	+		PS417_10770	0.49	-1.2
2,301,739	+		PS417_10770	0.49	-1.4
2,301,739	+		PS417_10770	0.49	+0.8
2,301,740	-		PS417_10770	0.49	-0.1
2,301,740	-		PS417_10770	0.49	+0.1
2,301,815	-		PS417_10770	0.51	-1.5
2,301,830	-		PS417_10770	0.52	+0.5
2,301,852	-		PS417_10770	0.52	-0.0
2,301,919	+		PS417_10770	0.54	-1.3
2,301,919	+		PS417_10770	0.54	+0.4
2,301,938	+		PS417_10770	0.54	-0.5
2,301,938	+		PS417_10770	0.54	+0.2
2,301,955	-		PS417_10770	0.55	+0.5
2,301,955	-		PS417_10770	0.55	+0.8
2,302,030	+		PS417_10770	0.57	+1.5
2,302,031	-		PS417_10770	0.57	-1.5
2,302,041	+		PS417_10770	0.57	-0.7
2,302,041	+		PS417_10770	0.57	-1.8
2,302,041	+		PS417_10770	0.57	-0.0
2,302,042	-		PS417_10770	0.57	+0.1
2,302,042	-		PS417_10770	0.57	-0.4
2,302,251	+		PS417_10770	0.62	+0.4
2,302,261	+		PS417_10770	0.62	-1.2
2,302,262	-		PS417_10770	0.62	-0.0
2,302,262	-		PS417_10770	0.62	-0.2
2,302,262	-		PS417_10770	0.62	+1.0
2,302,329	-		PS417_10770	0.64	-1.4
2,302,329	-		PS417_10770	0.64	+0.1
2,302,392	-		PS417_10770	0.65	+1.3
2,302,489	+		PS417_10770	0.68	-0.0
2,302,490	-		PS417_10770	0.68	+0.1
2,302,490	-		PS417_10770	0.68	-1.0
2,302,490	-		PS417_10770	0.68	+0.4
2,302,492	-		PS417_10770	0.68	+0.6
2,302,542	+		PS417_10770	0.69	-2.1
2,302,542	+		PS417_10770	0.69	-1.0
2,302,542	+		PS417_10770	0.69	-0.4
2,302,543	-		PS417_10770	0.69	-0.6
2,302,581	+		PS417_10770	0.70	-0.4
2,302,682	+		PS417_10770	0.73	-0.0
2,302,735	-		PS417_10770	0.74	-0.4
2,302,751	+		PS417_10770	0.74	-0.0
2,302,819	+		PS417_10770	0.76	-0.2
2,302,820	-		PS417_10770	0.76	+0.8
2,302,820	-		PS417_10770	0.76	+0.3
2,302,862	+		PS417_10770	0.77	-2.8
2,302,863	-		PS417_10770	0.77	-1.6
2,302,863	-		PS417_10770	0.77	-0.2
2,302,963	-		PS417_10770	0.80	-0.9
2,302,999	+		PS417_10770	0.80	-1.0
2,302,999	+		PS417_10770	0.80	-0.9
2,302,999	+		PS417_10770	0.80	-0.4
2,303,000	-		PS417_10770	0.80	+1.3
2,303,000	-		PS417_10770	0.80	-0.6
2,303,283	+		PS417_10770	0.87	-0.3
2,303,284	-		PS417_10770	0.87	+1.9
2,303,287	+		PS417_10770	0.88	-0.5
2,303,287	+		PS417_10770	0.88	-0.1
2,303,533	+				-0.5
2,303,534	-				-0.5
2,303,580	-				+0.1
2,303,668	-				+0.4
2,303,683	+				+0.2
2,303,684	-				+0.2
2,303,754	+				+0.4
2,303,755	-				+0.7
2,303,778	-				-1.7
2,303,801	+				+0.7
2,303,871	+				-0.7
2,303,886	+				-0.1
2,303,887	-				+1.6
2,303,887	-				-0.3
2,303,887	-				+0.4
2,303,887	-				-0.9
2,303,907	-				+0.1
2,303,907	-				-0.3
2,303,950	+		PS417_10775	0.14	-0.4
2,303,974	-		PS417_10775	0.19	+0.6
2,304,003	-		PS417_10775	0.24	+1.9
2,304,063	+		PS417_10775	0.35	-0.0
2,304,063	+		PS417_10775	0.35	+0.1
2,304,133	+		PS417_10775	0.48	-0.7
2,304,134	-		PS417_10775	0.48	+0.6
2,304,134	-		PS417_10775	0.48	+0.2
2,304,177	-		PS417_10775	0.56	-0.1
2,304,196	-		PS417_10775	0.59	-0.6
2,304,203	+		PS417_10775	0.60	+1.9
2,304,229	+		PS417_10775	0.65	-0.5
2,304,230	-		PS417_10775	0.65	+0.9
2,304,239	+		PS417_10775	0.67	-1.7
2,304,239	+		PS417_10775	0.67	+1.2
2,304,253	+				-1.2
2,304,254	-				+1.9
2,304,404	+				-1.3
2,304,405	-				+3.9
2,304,444	+				+0.4
2,304,463	-				-1.0
2,304,504	+				+0.6
2,304,504	+				-0.4
2,304,507	+				+0.9
2,304,508	-				+0.4
2,304,527	+				-0.7
2,304,573	-				-1.3
2,304,580	+				+2.9
2,304,581	-				+0.9
2,304,606	+				-0.2
2,304,774	+				+0.9
2,304,774	+				-1.8
2,304,775	-				-1.4
2,304,775	-				-1.0