Strain Fitness in Pseudomonas simiae WCS417 around PS417_06115

Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_06110 and PS417_06115 are separated by 6 nucleotidesPS417_06115 and PS417_06120 are separated by 142 nucleotidesPS417_06120 and PS417_06125 are separated by 22 nucleotides PS417_06110: PS417_06110 - RND transporter, at 1,353,263 to 1,354,363 _06110 PS417_06115: PS417_06115 - multidrug transporter AcrB, at 1,354,370 to 1,357,435 _06115 PS417_06120: PS417_06120 - hypothetical protein, at 1,357,578 to 1,357,850 _06120 PS417_06125: PS417_06125 - hypothetical protein, at 1,357,873 to 1,358,562 _06125 Position (kb) 1354 1355 1356 1357 1358Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1353.848 kb on - strand, within PS417_06110at 1354.016 kb on - strandat 1354.083 kb on + strand, within PS417_06110at 1354.084 kb on - strand, within PS417_06110at 1354.084 kb on - strand, within PS417_06110at 1354.084 kb on - strand, within PS417_06110at 1354.157 kb on + strand, within PS417_06110at 1354.157 kb on + strand, within PS417_06110at 1354.157 kb on + strand, within PS417_06110at 1354.189 kb on + strand, within PS417_06110at 1354.604 kb on + strandat 1354.798 kb on + strand, within PS417_06115at 1354.798 kb on + strand, within PS417_06115at 1354.799 kb on - strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.802 kb on + strand, within PS417_06115at 1354.803 kb on - strand, within PS417_06115at 1354.829 kb on + strand, within PS417_06115at 1354.830 kb on - strand, within PS417_06115at 1354.914 kb on + strand, within PS417_06115at 1355.198 kb on + strand, within PS417_06115at 1355.198 kb on + strand, within PS417_06115at 1355.504 kb on + strand, within PS417_06115at 1355.504 kb on + strand, within PS417_06115at 1355.504 kb on + strand, within PS417_06115at 1355.504 kb on + strand, within PS417_06115at 1355.504 kb on + strand, within PS417_06115at 1355.505 kb on - strand, within PS417_06115at 1355.507 kb on + strand, within PS417_06115at 1355.747 kb on + strand, within PS417_06115at 1355.748 kb on - strand, within PS417_06115at 1355.912 kb on + strand, within PS417_06115at 1355.912 kb on + strand, within PS417_06115at 1355.913 kb on - strand, within PS417_06115at 1355.922 kb on + strand, within PS417_06115at 1356.161 kb on + strand, within PS417_06115at 1356.161 kb on + strand, within PS417_06115at 1356.161 kb on + strand, within PS417_06115at 1356.161 kb on + strand, within PS417_06115at 1356.161 kb on + strand, within PS417_06115at 1356.162 kb on - strand, within PS417_06115at 1356.162 kb on - strand, within PS417_06115at 1356.162 kb on - strand, within PS417_06115at 1356.170 kb on + strand, within PS417_06115at 1356.171 kb on - strand, within PS417_06115at 1356.198 kb on - strand, within PS417_06115at 1356.612 kb on - strand, within PS417_06115at 1356.724 kb on - strand, within PS417_06115at 1356.724 kb on - strand, within PS417_06115at 1356.724 kb on - strand, within PS417_06115at 1356.821 kb on + strandat 1356.822 kb on - strand, within PS417_06115at 1356.822 kb on - strand, within PS417_06115at 1356.822 kb on - strand, within PS417_06115at 1356.822 kb on - strand, within PS417_06115at 1356.822 kb on - strand, within PS417_06115at 1356.822 kb on - strand, within PS417_06115at 1356.902 kb on + strand, within PS417_06115at 1357.092 kb on + strand, within PS417_06115at 1357.398 kb on - strandat 1357.398 kb on - strandat 1357.398 kb on - strandat 1357.398 kb on - strandat 1357.511 kb on + strandat 1357.602 kb on + strandat 1357.605 kb on + strandat 1357.606 kb on - strand, within PS417_06120at 1357.612 kb on - strand, within PS417_06120at 1357.623 kb on + strand, within PS417_06120at 1357.642 kb on - strand, within PS417_06120at 1357.642 kb on - strand, within PS417_06120at 1357.657 kb on - strand, within PS417_06120at 1357.680 kb on + strand, within PS417_06120at 1357.680 kb on + strand, within PS417_06120at 1357.681 kb on - strand, within PS417_06120at 1357.731 kb on + strand, within PS417_06120at 1357.732 kb on - strand, within PS417_06120at 1357.739 kb on + strand, within PS417_06120at 1357.740 kb on - strand, within PS417_06120at 1357.874 kb on + strandat 1358.063 kb on + strand, within PS417_06125at 1358.063 kb on + strandat 1358.063 kb on + strand, within PS417_06125at 1358.064 kb on - strand, within PS417_06125at 1358.064 kb on - strand, within PS417_06125at 1358.064 kb on - strand, within PS417_06125

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
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1,353,848 - PS417_06110 0.53 -1.7
1,354,016 - +0.4
1,354,083 + PS417_06110 0.74 +0.2
1,354,084 - PS417_06110 0.75 -0.3
1,354,084 - PS417_06110 0.75 +0.3
1,354,084 - PS417_06110 0.75 -0.5
1,354,157 + PS417_06110 0.81 +1.0
1,354,157 + PS417_06110 0.81 -1.2
1,354,157 + PS417_06110 0.81 +2.0
1,354,189 + PS417_06110 0.84 -1.9
1,354,604 + +1.8
1,354,798 + PS417_06115 0.14 +2.0
1,354,798 + PS417_06115 0.14 +0.4
1,354,799 - PS417_06115 0.14 +0.2
1,354,802 + PS417_06115 0.14 +0.6
1,354,802 + PS417_06115 0.14 -2.0
1,354,802 + PS417_06115 0.14 -0.9
1,354,802 + PS417_06115 0.14 +0.7
1,354,803 - PS417_06115 0.14 +0.0
1,354,829 + PS417_06115 0.15 -0.3
1,354,830 - PS417_06115 0.15 -1.7
1,354,914 + PS417_06115 0.18 -0.6
1,355,198 + PS417_06115 0.27 -0.1
1,355,198 + PS417_06115 0.27 +0.1
1,355,504 + PS417_06115 0.37 -1.3
1,355,504 + PS417_06115 0.37 +0.4
1,355,504 + PS417_06115 0.37 +1.0
1,355,504 + PS417_06115 0.37 -0.4
1,355,504 + PS417_06115 0.37 -0.3
1,355,505 - PS417_06115 0.37 -1.6
1,355,507 + PS417_06115 0.37 +2.2
1,355,747 + PS417_06115 0.45 +2.0
1,355,748 - PS417_06115 0.45 -0.4
1,355,912 + PS417_06115 0.50 +1.3
1,355,912 + PS417_06115 0.50 -0.1
1,355,913 - PS417_06115 0.50 -0.6
1,355,922 + PS417_06115 0.51 +1.0
1,356,161 + PS417_06115 0.58 +0.0
1,356,161 + PS417_06115 0.58 -0.4
1,356,161 + PS417_06115 0.58 -0.7
1,356,161 + PS417_06115 0.58 +0.0
1,356,161 + PS417_06115 0.58 -0.1
1,356,162 - PS417_06115 0.58 -0.8
1,356,162 - PS417_06115 0.58 +0.7
1,356,162 - PS417_06115 0.58 +0.0
1,356,170 + PS417_06115 0.59 +1.0
1,356,171 - PS417_06115 0.59 -0.7
1,356,198 - PS417_06115 0.60 -0.4
1,356,612 - PS417_06115 0.73 +1.4
1,356,724 - PS417_06115 0.77 +2.9
1,356,724 - PS417_06115 0.77 +1.2
1,356,724 - PS417_06115 0.77 -0.2
1,356,821 + -1.2
1,356,822 - PS417_06115 0.80 +0.0
1,356,822 - PS417_06115 0.80 +1.5
1,356,822 - PS417_06115 0.80 -0.1
1,356,822 - PS417_06115 0.80 +0.9
1,356,822 - PS417_06115 0.80 -0.9
1,356,822 - PS417_06115 0.80 -1.7
1,356,902 + PS417_06115 0.83 -0.2
1,357,092 + PS417_06115 0.89 -0.5
1,357,398 - +0.5
1,357,398 - -0.9
1,357,398 - -0.3
1,357,398 - -0.3
1,357,511 + +0.2
1,357,602 + -0.8
1,357,605 + +1.4
1,357,606 - PS417_06120 0.10 +1.2
1,357,612 - PS417_06120 0.12 +1.0
1,357,623 + PS417_06120 0.16 +0.1
1,357,642 - PS417_06120 0.23 -0.6
1,357,642 - PS417_06120 0.23 -1.1
1,357,657 - PS417_06120 0.29 -0.6
1,357,680 + PS417_06120 0.37 -1.5
1,357,680 + PS417_06120 0.37 +2.0
1,357,681 - PS417_06120 0.38 -0.8
1,357,731 + PS417_06120 0.56 -0.6
1,357,732 - PS417_06120 0.56 -0.3
1,357,739 + PS417_06120 0.59 +0.0
1,357,740 - PS417_06120 0.59 -1.3
1,357,874 + +0.2
1,358,063 + PS417_06125 0.28 -0.6
1,358,063 + -0.8
1,358,063 + PS417_06125 0.28 -1.5
1,358,064 - PS417_06125 0.28 -0.8
1,358,064 - PS417_06125 0.28 -0.6
1,358,064 - PS417_06125 0.28 -0.1

Or see this region's nucleotide sequence