Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04060 and PS417_04065 are separated by 76 nucleotides PS417_04065 and PS417_04070 are separated by 80 nucleotides
PS417_04060: PS417_04060 - dipeptide ABC transporter, permease component <small>(from data)</small>, at 910,110 to 911,120
_04060
PS417_04065: PS417_04065 - peptide ABC transporter substrate-binding protein, at 911,197 to 912,795
_04065
PS417_04070: PS417_04070 - porin, at 912,876 to 914,291
_04070
Position (kb) 911
912
913 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 910.423 kb on + strand, within PS417_04060 at 910.424 kb on - strand, within PS417_04060 at 910.933 kb on + strand, within PS417_04060 at 910.946 kb on + strand, within PS417_04060 at 911.114 kb on + strand at 911.131 kb on - strand at 911.223 kb on + strand at 911.346 kb on - strand at 911.581 kb on - strand, within PS417_04065 at 911.900 kb on + strand, within PS417_04065 at 911.901 kb on - strand, within PS417_04065 at 911.901 kb on - strand, within PS417_04065 at 912.061 kb on - strand, within PS417_04065 at 912.113 kb on + strand, within PS417_04065 at 912.114 kb on - strand, within PS417_04065 at 912.409 kb on - strand, within PS417_04065 at 912.491 kb on + strand, within PS417_04065 at 912.492 kb on - strand, within PS417_04065 at 912.672 kb on - strand at 912.779 kb on - strand at 912.863 kb on + strand at 912.873 kb on + strand at 912.899 kb on + strand at 912.900 kb on - strand at 912.964 kb on + strand at 912.964 kb on + strand at 912.964 kb on + strand at 912.980 kb on + strand at 913.073 kb on - strand, within PS417_04070 at 913.073 kb on - strand, within PS417_04070 at 913.280 kb on - strand, within PS417_04070 at 913.328 kb on + strand, within PS417_04070 at 913.367 kb on + strand, within PS417_04070 at 913.420 kb on + strand, within PS417_04070 at 913.484 kb on - strand, within PS417_04070
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 910,423 + PS417_04060 0.31 -0.5 910,424 - PS417_04060 0.31 -1.4 910,933 + PS417_04060 0.81 -0.3 910,946 + PS417_04060 0.83 -0.5 911,114 + -1.2 911,131 - -1.2 911,223 + -0.5 911,346 - -0.0 911,581 - PS417_04065 0.24 -0.5 911,900 + PS417_04065 0.44 +0.5 911,901 - PS417_04065 0.44 -0.8 911,901 - PS417_04065 0.44 -0.3 912,061 - PS417_04065 0.54 -0.9 912,113 + PS417_04065 0.57 +0.1 912,114 - PS417_04065 0.57 -0.3 912,409 - PS417_04065 0.76 -0.1 912,491 + PS417_04065 0.81 -1.5 912,492 - PS417_04065 0.81 -0.8 912,672 - -1.2 912,779 - -0.0 912,863 + +0.5 912,873 + +2.7 912,899 + -0.1 912,900 - -0.7 912,964 + -0.2 912,964 + -0.1 912,964 + +0.8 912,980 + -3.0 913,073 - PS417_04070 0.14 -1.5 913,073 - PS417_04070 0.14 -0.2 913,280 - PS417_04070 0.29 -0.5 913,328 + PS417_04070 0.32 -0.6 913,367 + PS417_04070 0.35 -0.1 913,420 + PS417_04070 0.38 -2.3 913,484 - PS417_04070 0.43 -1.2
Or see this region's nucleotide sequence