Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_26685 and PS417_26690 overlap by 1 nucleotides PS417_26690 and PS417_26695 are separated by 81 nucleotides PS417_26695 and PS417_26700 are separated by 24 nucleotides
PS417_26685: PS417_26685 - hypothetical protein, at 5,769,219 to 5,769,788
_26685
PS417_26690: PS417_26690 - Holliday junction resolvase, at 5,769,788 to 5,770,225
_26690
PS417_26695: PS417_26695 - uracil phosphoribosyltransferase, at 5,770,307 to 5,770,813
_26695
PS417_26700: PS417_26700 - aspartate carbamoyltransferase catalytic subunit, at 5,770,838 to 5,771,842
_26700
Position (kb) 5770
5771 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5769.309 kb on + strand, within PS417_26685 at 5769.444 kb on + strand, within PS417_26685 at 5769.580 kb on + strand, within PS417_26685 at 5770.213 kb on - strand at 5770.382 kb on - strand, within PS417_26695
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 5,769,309 + PS417_26685 0.16 -0.3 5,769,444 + PS417_26685 0.39 +1.2 5,769,580 + PS417_26685 0.63 -0.1 5,770,213 - -1.1 5,770,382 - PS417_26695 0.15 -3.1
Or see this region's nucleotide sequence