Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02475 and PS417_02480 overlap by 1 nucleotides PS417_02480 and PS417_02485 overlap by 1 nucleotides
PS417_02475: PS417_02475 - N-acetylmuramoyl-L-alanine amidase, at 565,078 to 566,499
_02475
PS417_02480: PS417_02480 - DNA mismatch repair protein, at 566,499 to 568,415
_02480
PS417_02485: PS417_02485 - tRNA delta(2)-isopentenylpyrophosphate transferase, at 568,415 to 569,386
_02485
Position (kb) 566
567
568
569 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand, within PS417_02475 at 566.296 kb on + strand at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.297 kb on - strand, within PS417_02475 at 566.409 kb on + strand at 567.285 kb on + strand, within PS417_02480 at 567.285 kb on + strand, within PS417_02480 at 567.660 kb on + strand, within PS417_02480 at 567.661 kb on - strand, within PS417_02480 at 567.700 kb on - strand, within PS417_02480 at 567.705 kb on + strand, within PS417_02480 at 567.706 kb on - strand, within PS417_02480 at 567.830 kb on + strand, within PS417_02480 at 567.873 kb on + strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 567.874 kb on - strand, within PS417_02480 at 568.171 kb on + strand, within PS417_02480 at 568.700 kb on - strand, within PS417_02485 at 568.731 kb on - strand, within PS417_02485 at 569.016 kb on - strand, within PS417_02485 at 569.018 kb on - strand, within PS417_02485 at 569.092 kb on + strand, within PS417_02485 at 569.093 kb on - strand, within PS417_02485 at 569.124 kb on + strand, within PS417_02485 at 569.179 kb on - strand, within PS417_02485
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 566,296 + PS417_02475 0.86 -0.8 566,296 + PS417_02475 0.86 -1.4 566,296 + +0.2 566,297 - PS417_02475 0.86 +0.2 566,297 - PS417_02475 0.86 +1.2 566,297 - PS417_02475 0.86 -2.0 566,297 - PS417_02475 0.86 -0.2 566,409 + -0.4 567,285 + PS417_02480 0.41 +6.2 567,285 + PS417_02480 0.41 -0.0 567,660 + PS417_02480 0.61 -0.7 567,661 - PS417_02480 0.61 +1.9 567,700 - PS417_02480 0.63 -1.6 567,705 + PS417_02480 0.63 -0.4 567,706 - PS417_02480 0.63 -0.8 567,830 + PS417_02480 0.69 +0.8 567,873 + PS417_02480 0.72 +0.7 567,874 - PS417_02480 0.72 +2.2 567,874 - PS417_02480 0.72 +1.2 568,171 + PS417_02480 0.87 -0.4 568,700 - PS417_02485 0.29 +0.2 568,731 - PS417_02485 0.33 +0.2 569,016 - PS417_02485 0.62 -0.4 569,018 - PS417_02485 0.62 +1.2 569,092 + PS417_02485 0.70 -0.6 569,093 - PS417_02485 0.70 -0.8 569,124 + PS417_02485 0.73 +0.2 569,179 - PS417_02485 0.79 +1.2
Or see this region's nucleotide sequence