Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21050 and PS417_21055 are separated by 2 nucleotides PS417_21055 and PS417_21060 are separated by 136 nucleotides
PS417_21050: PS417_21050 - serine acetyltransferase, at 4,579,972 to 4,580,964
_21050
PS417_21055: PS417_21055 - threonyl-tRNA synthetase, at 4,580,967 to 4,581,695
_21055
PS417_21060: PS417_21060 - 2-methylcitrate dehydratase, at 4,581,832 to 4,583,316
_21060
Position (kb) 4580
4581
4582 Strain fitness (log2 ratio) -1
0
1
2
3 at 4580.132 kb on - strand, within PS417_21050 at 4580.179 kb on + strand, within PS417_21050 at 4580.180 kb on - strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.203 kb on + strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.204 kb on - strand, within PS417_21050 at 4580.251 kb on - strand, within PS417_21050 at 4580.251 kb on - strand, within PS417_21050 at 4580.407 kb on + strand, within PS417_21050 at 4580.407 kb on + strand, within PS417_21050 at 4580.408 kb on - strand, within PS417_21050 at 4580.408 kb on - strand, within PS417_21050 at 4580.408 kb on - strand, within PS417_21050 at 4580.498 kb on + strand, within PS417_21050 at 4580.499 kb on - strand, within PS417_21050 at 4580.524 kb on + strand, within PS417_21050 at 4580.525 kb on - strand, within PS417_21050 at 4580.525 kb on - strand, within PS417_21050 at 4580.656 kb on + strand, within PS417_21050 at 4580.657 kb on - strand, within PS417_21050 at 4580.719 kb on - strand, within PS417_21050 at 4581.016 kb on - strand at 4581.077 kb on + strand, within PS417_21055 at 4581.077 kb on + strand, within PS417_21055 at 4581.077 kb on + strand, within PS417_21055 at 4581.241 kb on + strand, within PS417_21055 at 4581.247 kb on + strand, within PS417_21055 at 4581.248 kb on - strand, within PS417_21055 at 4581.801 kb on - strand at 4581.834 kb on - strand at 4582.238 kb on + strand, within PS417_21060 at 4582.238 kb on + strand, within PS417_21060 at 4582.238 kb on + strand, within PS417_21060 at 4582.239 kb on - strand, within PS417_21060 at 4582.239 kb on - strand, within PS417_21060 at 4582.435 kb on + strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.452 kb on - strand, within PS417_21060 at 4582.489 kb on - strand, within PS417_21060 at 4582.542 kb on - strand, within PS417_21060
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 4,580,132 - PS417_21050 0.16 +0.3 4,580,179 + PS417_21050 0.21 -1.0 4,580,180 - PS417_21050 0.21 -0.6 4,580,203 + PS417_21050 0.23 -0.3 4,580,203 + PS417_21050 0.23 +0.3 4,580,203 + PS417_21050 0.23 +0.1 4,580,203 + PS417_21050 0.23 +2.2 4,580,203 + PS417_21050 0.23 +1.1 4,580,204 - PS417_21050 0.23 +1.1 4,580,204 - PS417_21050 0.23 -0.3 4,580,204 - PS417_21050 0.23 -0.3 4,580,204 - PS417_21050 0.23 +0.7 4,580,251 - PS417_21050 0.28 +1.1 4,580,251 - PS417_21050 0.28 -0.1 4,580,407 + PS417_21050 0.44 -0.2 4,580,407 + PS417_21050 0.44 +0.2 4,580,408 - PS417_21050 0.44 +0.9 4,580,408 - PS417_21050 0.44 +1.4 4,580,408 - PS417_21050 0.44 -1.2 4,580,498 + PS417_21050 0.53 +0.4 4,580,499 - PS417_21050 0.53 +0.1 4,580,524 + PS417_21050 0.56 -0.1 4,580,525 - PS417_21050 0.56 +0.4 4,580,525 - PS417_21050 0.56 -0.4 4,580,656 + PS417_21050 0.69 -0.4 4,580,657 - PS417_21050 0.69 +0.6 4,580,719 - PS417_21050 0.75 +3.1 4,581,016 - +0.2 4,581,077 + PS417_21055 0.15 +0.9 4,581,077 + PS417_21055 0.15 -1.3 4,581,077 + PS417_21055 0.15 +0.4 4,581,241 + PS417_21055 0.38 -1.2 4,581,247 + PS417_21055 0.38 +0.0 4,581,248 - PS417_21055 0.39 +2.2 4,581,801 - +0.1 4,581,834 - -0.8 4,582,238 + PS417_21060 0.27 -0.6 4,582,238 + PS417_21060 0.27 -0.8 4,582,238 + PS417_21060 0.27 -0.2 4,582,239 - PS417_21060 0.27 +0.4 4,582,239 - PS417_21060 0.27 +0.3 4,582,435 + PS417_21060 0.41 +0.6 4,582,452 - PS417_21060 0.42 -0.2 4,582,452 - PS417_21060 0.42 +1.2 4,582,452 - PS417_21060 0.42 +0.5 4,582,452 - PS417_21060 0.42 -1.0 4,582,452 - PS417_21060 0.42 +0.1 4,582,489 - PS417_21060 0.44 -0.0 4,582,542 - PS417_21060 0.48 -0.2
Or see this region's nucleotide sequence