Experiment: Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00110 and PS417_00115 are separated by 130 nucleotides
PS417_00110: PS417_00110 - tRNA threonylcarbamoyladenosine biosynthesis protein RimN, at 23,683 to 24,240
_00110
PS417_00115: PS417_00115 - quinone oxidoreductase, at 24,371 to 25,348
_00115
Position (kb) 23
24
25 Strain fitness (log2 ratio) -2
-1
0
1
2 at 22.863 kb on - strand at 23.317 kb on + strand at 23.318 kb on - strand at 23.318 kb on - strand at 23.401 kb on - strand at 23.627 kb on - strand at 23.665 kb on + strand at 24.364 kb on + strand at 24.364 kb on + strand at 24.364 kb on + strand at 24.364 kb on + strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.365 kb on - strand at 24.366 kb on + strand at 24.397 kb on + strand at 24.526 kb on + strand, within PS417_00115 at 24.526 kb on + strand, within PS417_00115 at 24.527 kb on - strand, within PS417_00115 at 24.527 kb on - strand, within PS417_00115 at 24.543 kb on + strand, within PS417_00115 at 24.570 kb on + strand, within PS417_00115 at 24.571 kb on - strand, within PS417_00115 at 24.709 kb on - strand, within PS417_00115 at 24.942 kb on + strand, within PS417_00115 at 24.942 kb on + strand, within PS417_00115 at 24.942 kb on + strand, within PS417_00115 at 24.943 kb on - strand, within PS417_00115 at 24.943 kb on - strand, within PS417_00115 at 25.065 kb on + strand, within PS417_00115 at 25.212 kb on + strand, within PS417_00115 at 25.213 kb on - strand, within PS417_00115
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=25mM_NaCl; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16_outgrowth_LB; Time=7_days remove 22,863 - -0.4 23,317 + -0.5 23,318 - -0.1 23,318 - -0.1 23,401 - +0.1 23,627 - -0.2 23,665 + +0.4 24,364 + +0.1 24,364 + +1.0 24,364 + -0.2 24,364 + +0.2 24,365 - -1.8 24,365 - -0.1 24,365 - -1.7 24,365 - -1.0 24,365 - +0.1 24,365 - -0.9 24,366 + -0.4 24,397 + +0.1 24,526 + PS417_00115 0.16 -0.4 24,526 + PS417_00115 0.16 +2.5 24,527 - PS417_00115 0.16 +1.9 24,527 - PS417_00115 0.16 -0.2 24,543 + PS417_00115 0.18 -1.2 24,570 + PS417_00115 0.20 -0.1 24,571 - PS417_00115 0.20 -0.1 24,709 - PS417_00115 0.35 -1.5 24,942 + PS417_00115 0.58 +0.4 24,942 + PS417_00115 0.58 -0.3 24,942 + PS417_00115 0.58 -0.4 24,943 - PS417_00115 0.58 +1.1 24,943 - PS417_00115 0.58 +0.7 25,065 + PS417_00115 0.71 +1.5 25,212 + PS417_00115 0.86 -0.3 25,213 - PS417_00115 0.86 -0.9
Or see this region's nucleotide sequence