Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02780 and PS417_02785 are separated by 73 nucleotides PS417_02785 and PS417_02790 are separated by 113 nucleotides PS417_02790 and PS417_02795 overlap by 4 nucleotides PS417_02795 and PS417_02800 are separated by 5 nucleotides
PS417_02780: PS417_02780 - DNA-binding protein, at 632,255 to 633,199
_02780
PS417_02785: PS417_02785 - Urease (EC 3.5.1.5) <small>(from data)</small>, at 633,273 to 634,973
_02785
PS417_02790: PS417_02790 - urease subunit beta, at 635,087 to 635,392
_02790
PS417_02795: PS417_02795 - acetyltransferase, at 635,389 to 635,922
_02795
PS417_02800: PS417_02800 - acetyltransferase, at 635,928 to 636,440
_02800
Position (kb) 633
634
635 Strain fitness (log2 ratio) -1
0
1
2
3 at 632.273 kb on + strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.274 kb on - strand at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.411 kb on + strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.412 kb on - strand, within PS417_02780 at 632.633 kb on - strand, within PS417_02780 at 633.092 kb on + strand, within PS417_02780 at 633.093 kb on - strand, within PS417_02780 at 633.757 kb on + strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.758 kb on - strand, within PS417_02785 at 633.769 kb on + strand, within PS417_02785 at 633.770 kb on - strand, within PS417_02785 at 633.857 kb on + strand, within PS417_02785 at 634.165 kb on + strand, within PS417_02785 at 634.166 kb on - strand, within PS417_02785 at 634.248 kb on + strand, within PS417_02785 at 634.262 kb on - strand, within PS417_02785 at 634.861 kb on + strand at 634.939 kb on + strand at 634.939 kb on + strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.940 kb on - strand at 634.951 kb on + strand at 634.951 kb on + strand at 635.050 kb on + strand at 635.053 kb on + strand at 635.053 kb on + strand at 635.054 kb on - strand at 635.057 kb on + strand at 635.057 kb on + strand at 635.088 kb on + strand at 635.333 kb on - strand, within PS417_02790 at 635.377 kb on - strand at 635.417 kb on + strand at 635.418 kb on - strand at 635.485 kb on - strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.486 kb on + strand, within PS417_02795 at 635.487 kb on - strand, within PS417_02795 at 635.501 kb on + strand, within PS417_02795 at 635.502 kb on - strand, within PS417_02795 at 635.540 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.629 kb on + strand, within PS417_02795 at 635.630 kb on - strand, within PS417_02795
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 632,273 + +3.4 632,274 - +1.3 632,274 - +0.9 632,274 - -0.5 632,411 + PS417_02780 0.17 -0.8 632,411 + PS417_02780 0.17 +0.2 632,411 + PS417_02780 0.17 -0.2 632,412 - PS417_02780 0.17 -1.5 632,412 - PS417_02780 0.17 -0.5 632,633 - PS417_02780 0.40 -0.1 633,092 + PS417_02780 0.89 -0.6 633,093 - PS417_02780 0.89 -1.7 633,757 + PS417_02785 0.28 +0.8 633,758 - PS417_02785 0.29 +2.0 633,758 - PS417_02785 0.29 +2.1 633,769 + PS417_02785 0.29 -0.0 633,770 - PS417_02785 0.29 +0.9 633,857 + PS417_02785 0.34 -0.2 634,165 + PS417_02785 0.52 -0.1 634,166 - PS417_02785 0.52 +2.1 634,248 + PS417_02785 0.57 -1.1 634,262 - PS417_02785 0.58 +0.2 634,861 + -0.7 634,939 + -0.3 634,939 + -1.1 634,940 - +0.1 634,940 - -0.1 634,940 - -0.5 634,951 + -1.2 634,951 + -1.2 635,050 + -0.3 635,053 + +0.1 635,053 + +1.1 635,054 - +0.3 635,057 + +0.2 635,057 + -0.3 635,088 + -0.7 635,333 - PS417_02790 0.80 -0.5 635,377 - +0.7 635,417 + -1.3 635,418 - -0.7 635,485 - PS417_02795 0.18 +0.5 635,486 + PS417_02795 0.18 +2.3 635,486 + PS417_02795 0.18 -0.8 635,487 - PS417_02795 0.18 -0.3 635,501 + PS417_02795 0.21 -0.5 635,502 - PS417_02795 0.21 -0.4 635,540 + PS417_02795 0.28 -0.2 635,629 + PS417_02795 0.45 -0.2 635,629 + PS417_02795 0.45 +0.3 635,630 - PS417_02795 0.45 +0.4
Or see this region's nucleotide sequence