Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27155 and PS417_27160 overlap by 4 nucleotides PS417_27160 and PS417_27165 are separated by 9 nucleotides PS417_27165 and PS417_27170 are separated by 25 nucleotides
PS417_27155: PS417_27155 - aliphatic sulfonates transport ATP-binding subunit, at 5,862,542 to 5,863,348
_27155
PS417_27160: PS417_27160 - alkanesulfonate transporter permease subunit, at 5,863,345 to 5,864,133
_27160
PS417_27165: PS417_27165 - alkanesulfonate monooxygenase, at 5,864,143 to 5,865,291
_27165
PS417_27170: PS417_27170 - ABC transporter substrate-binding protein, at 5,865,317 to 5,866,285
_27170
Position (kb) 5864
5865
5866 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5863.240 kb on + strand, within PS417_27155 at 5863.448 kb on + strand, within PS417_27160 at 5863.448 kb on + strand, within PS417_27160 at 5863.449 kb on - strand, within PS417_27160 at 5863.449 kb on - strand, within PS417_27160 at 5863.449 kb on - strand, within PS417_27160 at 5863.658 kb on + strand, within PS417_27160 at 5863.658 kb on + strand, within PS417_27160 at 5863.659 kb on - strand, within PS417_27160 at 5863.709 kb on + strand, within PS417_27160 at 5863.710 kb on - strand, within PS417_27160 at 5863.721 kb on + strand, within PS417_27160 at 5864.029 kb on - strand, within PS417_27160 at 5864.080 kb on + strand at 5864.080 kb on + strand at 5864.080 kb on + strand at 5864.080 kb on + strand at 5864.081 kb on - strand at 5864.081 kb on - strand at 5864.126 kb on + strand at 5864.126 kb on + strand at 5864.126 kb on + strand at 5864.127 kb on - strand at 5864.144 kb on + strand at 5864.144 kb on + strand at 5864.145 kb on - strand at 5864.207 kb on + strand at 5864.207 kb on + strand at 5864.208 kb on - strand at 5864.208 kb on - strand at 5864.310 kb on + strand, within PS417_27165 at 5864.310 kb on + strand, within PS417_27165 at 5864.311 kb on - strand, within PS417_27165 at 5864.617 kb on - strand, within PS417_27165 at 5864.802 kb on - strand, within PS417_27165 at 5864.843 kb on + strand, within PS417_27165 at 5864.844 kb on - strand, within PS417_27165 at 5864.976 kb on + strand, within PS417_27165 at 5865.242 kb on + strand at 5865.399 kb on + strand at 5865.399 kb on + strand at 5865.400 kb on - strand at 5865.640 kb on - strand, within PS417_27170 at 5865.640 kb on - strand, within PS417_27170 at 5865.839 kb on + strand, within PS417_27170 at 5865.840 kb on - strand, within PS417_27170 at 5865.849 kb on + strand at 5865.850 kb on - strand, within PS417_27170 at 5866.170 kb on + strand, within PS417_27170
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,863,240 + PS417_27155 0.86 +0.5 5,863,448 + PS417_27160 0.13 +0.2 5,863,448 + PS417_27160 0.13 -0.7 5,863,449 - PS417_27160 0.13 -0.4 5,863,449 - PS417_27160 0.13 -1.4 5,863,449 - PS417_27160 0.13 -0.6 5,863,658 + PS417_27160 0.40 -0.7 5,863,658 + PS417_27160 0.40 -0.6 5,863,659 - PS417_27160 0.40 +0.5 5,863,709 + PS417_27160 0.46 +1.0 5,863,710 - PS417_27160 0.46 +2.0 5,863,721 + PS417_27160 0.48 -1.2 5,864,029 - PS417_27160 0.87 +0.6 5,864,080 + +1.1 5,864,080 + +2.4 5,864,080 + -0.3 5,864,080 + +1.3 5,864,081 - -0.4 5,864,081 - -1.0 5,864,126 + -1.0 5,864,126 + +1.0 5,864,126 + -0.1 5,864,127 - -0.8 5,864,144 + -0.7 5,864,144 + -0.9 5,864,145 - +1.6 5,864,207 + -0.3 5,864,207 + -0.4 5,864,208 - -0.7 5,864,208 - -0.3 5,864,310 + PS417_27165 0.15 +0.6 5,864,310 + PS417_27165 0.15 +0.0 5,864,311 - PS417_27165 0.15 +0.8 5,864,617 - PS417_27165 0.41 +1.2 5,864,802 - PS417_27165 0.57 +0.4 5,864,843 + PS417_27165 0.61 +0.6 5,864,844 - PS417_27165 0.61 +1.2 5,864,976 + PS417_27165 0.72 +1.0 5,865,242 + +0.9 5,865,399 + -0.3 5,865,399 + +1.2 5,865,400 - +0.6 5,865,640 - PS417_27170 0.33 +1.2 5,865,640 - PS417_27170 0.33 -0.2 5,865,839 + PS417_27170 0.54 +1.2 5,865,840 - PS417_27170 0.54 -0.8 5,865,849 + +1.6 5,865,850 - PS417_27170 0.55 -1.9 5,866,170 + PS417_27170 0.88 +1.3
Or see this region's nucleotide sequence