Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_02680 and PS417_02685 are separated by 179 nucleotides PS417_02685 and PS417_02690 overlap by 29 nucleotides
PS417_02680: PS417_02680 - hypothetical protein, at 613,838 to 614,605
_02680
PS417_02685: PS417_02685 - cation diffusion facilitator family transporter, at 614,785 to 615,690
_02685
PS417_02690: PS417_02690 - N-acylglucosamine 2-epimerase, at 615,662 to 616,780
_02690
Position (kb) 614
615
616 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 613.855 kb on + strand at 613.856 kb on - strand at 614.106 kb on + strand, within PS417_02680 at 614.267 kb on + strand, within PS417_02680 at 614.291 kb on + strand, within PS417_02680 at 614.291 kb on + strand, within PS417_02680 at 614.292 kb on - strand, within PS417_02680 at 614.439 kb on - strand, within PS417_02680 at 614.451 kb on - strand, within PS417_02680 at 614.603 kb on + strand at 614.603 kb on + strand at 614.603 kb on + strand at 614.604 kb on - strand at 614.604 kb on - strand at 614.604 kb on - strand at 614.718 kb on + strand at 614.718 kb on + strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.719 kb on - strand at 614.723 kb on + strand at 614.738 kb on - strand at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.061 kb on + strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.062 kb on - strand, within PS417_02685 at 615.134 kb on - strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.166 kb on + strand, within PS417_02685 at 615.167 kb on - strand, within PS417_02685 at 615.175 kb on + strand, within PS417_02685 at 615.176 kb on - strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.328 kb on + strand, within PS417_02685 at 615.329 kb on - strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.413 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.496 kb on + strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.497 kb on - strand, within PS417_02685 at 615.506 kb on - strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.542 kb on + strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.543 kb on - strand, within PS417_02685 at 615.663 kb on + strand at 615.699 kb on + strand at 615.892 kb on + strand, within PS417_02690 at 615.893 kb on - strand, within PS417_02690 at 616.087 kb on + strand, within PS417_02690 at 616.088 kb on - strand, within PS417_02690 at 616.303 kb on - strand, within PS417_02690 at 616.480 kb on - strand, within PS417_02690 at 616.596 kb on + strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.597 kb on - strand, within PS417_02690 at 616.671 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 613,855 + -0.6 613,856 - +0.8 614,106 + PS417_02680 0.35 +1.3 614,267 + PS417_02680 0.56 -0.9 614,291 + PS417_02680 0.59 +0.5 614,291 + PS417_02680 0.59 +3.0 614,292 - PS417_02680 0.59 +0.5 614,439 - PS417_02680 0.78 +1.5 614,451 - PS417_02680 0.80 +2.5 614,603 + +0.3 614,603 + +0.8 614,603 + -1.4 614,604 - +0.4 614,604 - +0.3 614,604 - +0.2 614,718 + +0.5 614,718 + +0.6 614,719 - -2.4 614,719 - +0.1 614,719 - -1.3 614,719 - -1.0 614,719 - -1.0 614,719 - -0.5 614,719 - +1.5 614,723 + -0.1 614,738 - +1.0 615,061 + PS417_02685 0.30 -0.8 615,061 + PS417_02685 0.30 -1.1 615,061 + PS417_02685 0.30 +1.5 615,062 - PS417_02685 0.31 -0.6 615,062 - PS417_02685 0.31 -1.0 615,134 - PS417_02685 0.39 +1.8 615,166 + PS417_02685 0.42 -0.0 615,166 + PS417_02685 0.42 +1.5 615,167 - PS417_02685 0.42 +0.9 615,175 + PS417_02685 0.43 -0.0 615,176 - PS417_02685 0.43 +5.6 615,328 + PS417_02685 0.60 -0.8 615,328 + PS417_02685 0.60 -0.5 615,329 - PS417_02685 0.60 -0.8 615,413 + PS417_02685 0.69 -0.3 615,413 + PS417_02685 0.69 -0.8 615,496 + PS417_02685 0.78 -0.5 615,496 + PS417_02685 0.78 -0.3 615,496 + PS417_02685 0.78 +0.8 615,496 + PS417_02685 0.78 -0.9 615,497 - PS417_02685 0.79 -0.3 615,497 - PS417_02685 0.79 +0.5 615,497 - PS417_02685 0.79 -0.4 615,497 - PS417_02685 0.79 +0.2 615,497 - PS417_02685 0.79 -2.9 615,506 - PS417_02685 0.80 +2.0 615,542 + PS417_02685 0.84 -0.4 615,542 + PS417_02685 0.84 +0.1 615,542 + PS417_02685 0.84 -1.3 615,543 - PS417_02685 0.84 +1.0 615,543 - PS417_02685 0.84 +1.4 615,543 - PS417_02685 0.84 +0.6 615,543 - PS417_02685 0.84 -0.1 615,543 - PS417_02685 0.84 +1.5 615,663 + -0.5 615,699 + -1.0 615,892 + PS417_02690 0.21 +0.1 615,893 - PS417_02690 0.21 -0.7 616,087 + PS417_02690 0.38 -1.1 616,088 - PS417_02690 0.38 +1.7 616,303 - PS417_02690 0.57 -0.2 616,480 - PS417_02690 0.73 -1.8 616,596 + PS417_02690 0.83 +3.1 616,597 - PS417_02690 0.84 +0.4 616,597 - PS417_02690 0.84 -1.3 616,671 + +0.4
Or see this region's nucleotide sequence