Strain Fitness in Pseudomonas simiae WCS417 around PS417_24210

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPS417_24205 and PS417_24210 are separated by 124 nucleotidesPS417_24210 and PS417_24215 are separated by 15 nucleotidesPS417_24215 and PS417_24220 are separated by 170 nucleotides PS417_24205: PS417_24205 - hypothetical protein, at 5,249,499 to 5,250,524 _24205 PS417_24210: PS417_24210 - dolichyl-phosphate-mannose-protein mannosyltransferase, at 5,250,649 to 5,252,082 _24210 PS417_24215: PS417_24215 - hypothetical protein, at 5,252,098 to 5,252,586 _24215 PS417_24220: PS417_24220 - hypothetical protein, at 5,252,757 to 5,254,577 _24220 Position (kb) 5250 5251 5252 5253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5249.649 kb on + strand, within PS417_24205at 5249.649 kb on + strand, within PS417_24205at 5249.650 kb on - strand, within PS417_24205at 5249.650 kb on - strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.758 kb on + strand, within PS417_24205at 5249.759 kb on - strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.850 kb on + strand, within PS417_24205at 5249.851 kb on - strand, within PS417_24205at 5249.851 kb on - strand, within PS417_24205at 5249.920 kb on - strand, within PS417_24205at 5249.920 kb on - strand, within PS417_24205at 5249.984 kb on + strand, within PS417_24205at 5250.042 kb on + strand, within PS417_24205at 5250.043 kb on - strand, within PS417_24205at 5250.045 kb on - strand, within PS417_24205at 5250.114 kb on + strand, within PS417_24205at 5250.115 kb on - strand, within PS417_24205at 5250.273 kb on + strand, within PS417_24205at 5250.363 kb on + strand, within PS417_24205at 5250.363 kb on + strand, within PS417_24205at 5250.363 kb on + strand, within PS417_24205at 5250.364 kb on - strand, within PS417_24205at 5250.453 kb on - strandat 5250.453 kb on - strandat 5250.540 kb on + strandat 5250.541 kb on - strandat 5250.938 kb on - strand, within PS417_24210at 5251.015 kb on + strand, within PS417_24210at 5251.015 kb on + strand, within PS417_24210at 5251.290 kb on + strand, within PS417_24210at 5251.290 kb on + strand, within PS417_24210at 5251.295 kb on + strand, within PS417_24210at 5251.296 kb on - strand, within PS417_24210at 5251.426 kb on + strand, within PS417_24210at 5251.427 kb on - strand, within PS417_24210at 5251.439 kb on - strand, within PS417_24210at 5251.439 kb on - strand, within PS417_24210at 5251.439 kb on - strand, within PS417_24210at 5251.441 kb on + strandat 5251.441 kb on + strand, within PS417_24210at 5251.441 kb on + strand, within PS417_24210at 5251.442 kb on - strand, within PS417_24210at 5251.442 kb on - strand, within PS417_24210at 5251.444 kb on + strand, within PS417_24210at 5251.444 kb on + strand, within PS417_24210at 5251.444 kb on + strand, within PS417_24210at 5251.445 kb on - strand, within PS417_24210at 5251.445 kb on - strand, within PS417_24210at 5251.445 kb on - strand, within PS417_24210at 5251.492 kb on + strand, within PS417_24210at 5251.613 kb on - strand, within PS417_24210at 5251.657 kb on + strand, within PS417_24210at 5251.657 kb on + strandat 5251.658 kb on - strand, within PS417_24210at 5251.658 kb on - strand, within PS417_24210at 5251.706 kb on - strand, within PS417_24210at 5251.706 kb on - strand, within PS417_24210at 5251.724 kb on + strand, within PS417_24210at 5251.724 kb on + strand, within PS417_24210at 5251.760 kb on - strand, within PS417_24210at 5251.865 kb on + strand, within PS417_24210at 5251.865 kb on + strand, within PS417_24210at 5251.922 kb on - strand, within PS417_24210at 5251.925 kb on + strand, within PS417_24210at 5251.926 kb on - strand, within PS417_24210at 5251.960 kb on + strandat 5251.960 kb on + strandat 5251.961 kb on - strandat 5251.961 kb on - strandat 5251.961 kb on - strandat 5251.961 kb on - strandat 5252.062 kb on + strandat 5252.062 kb on + strandat 5252.063 kb on - strandat 5252.063 kb on - strandat 5252.065 kb on + strandat 5252.065 kb on + strandat 5252.065 kb on + strandat 5252.065 kb on + strandat 5252.066 kb on - strandat 5252.081 kb on - strandat 5252.558 kb on + strandat 5252.558 kb on + strandat 5252.558 kb on + strandat 5252.559 kb on - strandat 5252.559 kb on - strandat 5252.559 kb on - strandat 5252.559 kb on - strandat 5252.559 kb on - strandat 5252.562 kb on + strandat 5252.562 kb on + strandat 5252.563 kb on - strandat 5252.563 kb on - strandat 5252.563 kb on - strandat 5252.624 kb on - strandat 5252.624 kb on - strandat 5252.636 kb on - strandat 5252.682 kb on - strandat 5252.698 kb on + strandat 5252.713 kb on + strandat 5253.001 kb on - strand, within PS417_24220at 5253.063 kb on + strand, within PS417_24220at 5253.063 kb on + strand, within PS417_24220at 5253.064 kb on - strand, within PS417_24220

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
remove
5,249,649 + PS417_24205 0.15 -1.4
5,249,649 + PS417_24205 0.15 -0.0
5,249,650 - PS417_24205 0.15 -0.7
5,249,650 - PS417_24205 0.15 +0.1
5,249,758 + PS417_24205 0.25 -0.7
5,249,758 + PS417_24205 0.25 -0.8
5,249,758 + PS417_24205 0.25 -1.9
5,249,758 + PS417_24205 0.25 -2.2
5,249,759 - PS417_24205 0.25 +0.6
5,249,850 + PS417_24205 0.34 -0.1
5,249,850 + PS417_24205 0.34 -0.1
5,249,850 + PS417_24205 0.34 +0.0
5,249,850 + PS417_24205 0.34 -1.0
5,249,851 - PS417_24205 0.34 +1.0
5,249,851 - PS417_24205 0.34 -0.6
5,249,920 - PS417_24205 0.41 +1.6
5,249,920 - PS417_24205 0.41 +0.0
5,249,984 + PS417_24205 0.47 -0.3
5,250,042 + PS417_24205 0.53 +0.6
5,250,043 - PS417_24205 0.53 -0.2
5,250,045 - PS417_24205 0.53 -0.2
5,250,114 + PS417_24205 0.60 +3.2
5,250,115 - PS417_24205 0.60 -0.0
5,250,273 + PS417_24205 0.75 -1.8
5,250,363 + PS417_24205 0.84 -0.0
5,250,363 + PS417_24205 0.84 -1.9
5,250,363 + PS417_24205 0.84 +0.9
5,250,364 - PS417_24205 0.84 -0.2
5,250,453 - +0.2
5,250,453 - +0.0
5,250,540 + +0.2
5,250,541 - +0.0
5,250,938 - PS417_24210 0.20 -1.7
5,251,015 + PS417_24210 0.26 +0.0
5,251,015 + PS417_24210 0.26 +0.1
5,251,290 + PS417_24210 0.45 +0.1
5,251,290 + PS417_24210 0.45 +0.5
5,251,295 + PS417_24210 0.45 -0.8
5,251,296 - PS417_24210 0.45 +3.7
5,251,426 + PS417_24210 0.54 +3.8
5,251,427 - PS417_24210 0.54 +1.0
5,251,439 - PS417_24210 0.55 +0.1
5,251,439 - PS417_24210 0.55 +0.0
5,251,439 - PS417_24210 0.55 -1.3
5,251,441 + +0.6
5,251,441 + PS417_24210 0.55 +1.9
5,251,441 + PS417_24210 0.55 +4.7
5,251,442 - PS417_24210 0.55 -0.5
5,251,442 - PS417_24210 0.55 -0.7
5,251,444 + PS417_24210 0.55 -0.6
5,251,444 + PS417_24210 0.55 -0.1
5,251,444 + PS417_24210 0.55 +0.2
5,251,445 - PS417_24210 0.56 -1.9
5,251,445 - PS417_24210 0.56 +1.0
5,251,445 - PS417_24210 0.56 -3.1
5,251,492 + PS417_24210 0.59 -0.2
5,251,613 - PS417_24210 0.67 +1.2
5,251,657 + PS417_24210 0.70 +0.4
5,251,657 + +0.3
5,251,658 - PS417_24210 0.70 -0.9
5,251,658 - PS417_24210 0.70 -0.2
5,251,706 - PS417_24210 0.74 -1.2
5,251,706 - PS417_24210 0.74 +0.4
5,251,724 + PS417_24210 0.75 +0.1
5,251,724 + PS417_24210 0.75 +0.5
5,251,760 - PS417_24210 0.77 +0.2
5,251,865 + PS417_24210 0.85 -1.0
5,251,865 + PS417_24210 0.85 -0.7
5,251,922 - PS417_24210 0.89 -0.2
5,251,925 + PS417_24210 0.89 -0.2
5,251,926 - PS417_24210 0.89 -0.2
5,251,960 + +1.2
5,251,960 + +0.6
5,251,961 - -2.1
5,251,961 - +0.4
5,251,961 - +0.4
5,251,961 - +0.7
5,252,062 + +0.0
5,252,062 + +0.7
5,252,063 - +1.0
5,252,063 - +0.6
5,252,065 + -0.7
5,252,065 + -1.2
5,252,065 + -0.8
5,252,065 + -0.5
5,252,066 - +1.6
5,252,081 - -0.1
5,252,558 + -0.1
5,252,558 + -1.9
5,252,558 + -1.2
5,252,559 - -1.1
5,252,559 - -1.0
5,252,559 - -0.5
5,252,559 - -1.5
5,252,559 - -0.2
5,252,562 + -0.5
5,252,562 + -0.4
5,252,563 - -0.8
5,252,563 - +0.3
5,252,563 - -0.8
5,252,624 - -0.4
5,252,624 - +0.1
5,252,636 - +1.6
5,252,682 - -1.7
5,252,698 + +0.3
5,252,713 + -0.6
5,253,001 - PS417_24220 0.13 +4.3
5,253,063 + PS417_24220 0.17 +0.8
5,253,063 + PS417_24220 0.17 +0.9
5,253,064 - PS417_24220 0.17 +0.3

Or see this region's nucleotide sequence