Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19775 and PS417_19780 overlap by 4 nucleotides PS417_19780 and PS417_19785 are separated by 65 nucleotides PS417_19785 and PS417_19790 are separated by 3 nucleotides
PS417_19775: PS417_19775 - chemotaxis protein CheY, at 4,293,786 to 4,295,504
_19775
PS417_19780: PS417_19780 - anti-anti-sigma factor, at 4,295,501 to 4,295,806
_19780
PS417_19785: PS417_19785 - flagellar biogenesis protein, at 4,295,872 to 4,296,321
_19785
PS417_19790: PS417_19790 - ATP synthase, at 4,296,325 to 4,297,683
_19790
Position (kb) 4295
4296 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4294.566 kb on - strand, within PS417_19775 at 4294.801 kb on + strand, within PS417_19775 at 4294.801 kb on + strand, within PS417_19775 at 4294.822 kb on + strand, within PS417_19775 at 4294.822 kb on + strand, within PS417_19775 at 4294.823 kb on - strand, within PS417_19775 at 4294.823 kb on - strand, within PS417_19775 at 4294.823 kb on - strand, within PS417_19775 at 4294.901 kb on + strand, within PS417_19775 at 4294.901 kb on + strand, within PS417_19775 at 4294.902 kb on - strand, within PS417_19775 at 4294.902 kb on - strand, within PS417_19775 at 4294.994 kb on + strand, within PS417_19775 at 4294.995 kb on - strand, within PS417_19775 at 4295.056 kb on + strand, within PS417_19775 at 4295.056 kb on + strand, within PS417_19775 at 4295.162 kb on - strand, within PS417_19775 at 4295.395 kb on - strand at 4295.566 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.649 kb on + strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.650 kb on - strand, within PS417_19780 at 4295.677 kb on - strand, within PS417_19780 at 4295.694 kb on + strand, within PS417_19780 at 4295.707 kb on - strand, within PS417_19780 at 4295.845 kb on - strand at 4295.871 kb on - strand at 4295.871 kb on - strand at 4295.876 kb on + strand at 4295.876 kb on + strand at 4295.877 kb on - strand at 4295.964 kb on - strand, within PS417_19785 at 4295.964 kb on - strand, within PS417_19785 at 4296.170 kb on + strand, within PS417_19785 at 4296.237 kb on - strand, within PS417_19785 at 4296.414 kb on - strand at 4296.414 kb on - strand at 4296.552 kb on + strand, within PS417_19790 at 4296.553 kb on - strand, within PS417_19790 at 4296.605 kb on + strand, within PS417_19790 at 4296.729 kb on - strand, within PS417_19790 at 4296.729 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,294,566 - PS417_19775 0.45 +2.8 4,294,801 + PS417_19775 0.59 -0.8 4,294,801 + PS417_19775 0.59 -1.4 4,294,822 + PS417_19775 0.60 +2.2 4,294,822 + PS417_19775 0.60 +0.0 4,294,823 - PS417_19775 0.60 +0.7 4,294,823 - PS417_19775 0.60 +0.2 4,294,823 - PS417_19775 0.60 +0.6 4,294,901 + PS417_19775 0.65 +0.6 4,294,901 + PS417_19775 0.65 -0.3 4,294,902 - PS417_19775 0.65 +1.1 4,294,902 - PS417_19775 0.65 +0.0 4,294,994 + PS417_19775 0.70 +1.9 4,294,995 - PS417_19775 0.70 -1.9 4,295,056 + PS417_19775 0.74 -0.4 4,295,056 + PS417_19775 0.74 -0.7 4,295,162 - PS417_19775 0.80 +0.1 4,295,395 - -0.2 4,295,566 + PS417_19780 0.21 -0.7 4,295,649 + PS417_19780 0.48 +0.2 4,295,649 + PS417_19780 0.48 +0.4 4,295,649 + PS417_19780 0.48 -0.6 4,295,650 - PS417_19780 0.49 +0.6 4,295,650 - PS417_19780 0.49 +0.6 4,295,650 - PS417_19780 0.49 +4.0 4,295,650 - PS417_19780 0.49 -0.6 4,295,650 - PS417_19780 0.49 -1.9 4,295,650 - PS417_19780 0.49 +0.3 4,295,677 - PS417_19780 0.58 +0.1 4,295,694 + PS417_19780 0.63 +0.6 4,295,707 - PS417_19780 0.67 -0.5 4,295,845 - -0.9 4,295,871 - +0.8 4,295,871 - -1.0 4,295,876 + +1.4 4,295,876 + -0.2 4,295,877 - +0.0 4,295,964 - PS417_19785 0.20 +1.1 4,295,964 - PS417_19785 0.20 +2.0 4,296,170 + PS417_19785 0.66 +0.9 4,296,237 - PS417_19785 0.81 +1.1 4,296,414 - +1.1 4,296,414 - +1.0 4,296,552 + PS417_19790 0.17 +2.0 4,296,553 - PS417_19790 0.17 +0.8 4,296,605 + PS417_19790 0.21 +0.6 4,296,729 - PS417_19790 0.30 +0.2 4,296,729 - +0.0
Or see this region's nucleotide sequence