Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_19480 and PS417_19490 are separated by 413 nucleotides PS417_19490 and PS417_19495 are separated by 17 nucleotides
PS417_19480: PS417_19480 - aminopeptidase, at 4,222,992 to 4,224,281
_19480
PS417_19490: PS417_19490 - mechanosensitive ion channel protein, at 4,224,695 to 4,226,860
_19490
PS417_19495: PS417_19495 - N-acyl-L-amino acid amidohydrolase, at 4,226,878 to 4,228,224
_19495
Position (kb) 4224
4225
4226
4227 Strain fitness (log2 ratio) -1
0
1
2 at 4223.875 kb on + strand, within PS417_19480 at 4223.875 kb on + strand, within PS417_19480 at 4223.880 kb on - strand at 4223.880 kb on - strand, within PS417_19480 at 4223.927 kb on - strand, within PS417_19480 at 4224.258 kb on + strand at 4224.259 kb on - strand at 4224.375 kb on - strand at 4224.613 kb on + strand at 4224.614 kb on - strand at 4224.655 kb on + strand at 4225.310 kb on + strand, within PS417_19490 at 4225.310 kb on + strand, within PS417_19490 at 4225.310 kb on + strand, within PS417_19490 at 4225.311 kb on - strand at 4225.358 kb on + strand, within PS417_19490 at 4225.445 kb on + strand, within PS417_19490 at 4225.446 kb on - strand, within PS417_19490 at 4225.937 kb on + strand, within PS417_19490 at 4225.973 kb on - strand, within PS417_19490 at 4227.165 kb on - strand, within PS417_19495 at 4227.165 kb on - strand, within PS417_19495 at 4227.271 kb on + strand, within PS417_19495 at 4227.272 kb on - strand, within PS417_19495 at 4227.394 kb on + strand, within PS417_19495 at 4227.394 kb on + strand, within PS417_19495 at 4227.394 kb on + strand, within PS417_19495 at 4227.394 kb on + strand, within PS417_19495 at 4227.769 kb on + strand, within PS417_19495 at 4227.855 kb on - strand, within PS417_19495 at 4227.855 kb on - strand, within PS417_19495
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 4,223,875 + PS417_19480 0.68 +1.6 4,223,875 + PS417_19480 0.68 +0.4 4,223,880 - +0.6 4,223,880 - PS417_19480 0.69 -0.9 4,223,927 - PS417_19480 0.72 -0.1 4,224,258 + +0.6 4,224,259 - -0.3 4,224,375 - -0.6 4,224,613 + -0.1 4,224,614 - +0.6 4,224,655 + -0.4 4,225,310 + PS417_19490 0.28 -1.4 4,225,310 + PS417_19490 0.28 +0.6 4,225,310 + PS417_19490 0.28 -1.0 4,225,311 - +0.6 4,225,358 + PS417_19490 0.31 +0.2 4,225,445 + PS417_19490 0.35 -1.0 4,225,446 - PS417_19490 0.35 +0.0 4,225,937 + PS417_19490 0.57 -0.7 4,225,973 - PS417_19490 0.59 -0.6 4,227,165 - PS417_19495 0.21 +0.7 4,227,165 - PS417_19495 0.21 +0.3 4,227,271 + PS417_19495 0.29 +1.9 4,227,272 - PS417_19495 0.29 +0.0 4,227,394 + PS417_19495 0.38 -0.4 4,227,394 + PS417_19495 0.38 +1.3 4,227,394 + PS417_19495 0.38 +1.8 4,227,394 + PS417_19495 0.38 -0.5 4,227,769 + PS417_19495 0.66 -0.4 4,227,855 - PS417_19495 0.73 +1.2 4,227,855 - PS417_19495 0.73 +0.4
Or see this region's nucleotide sequence