Strain Fitness in Pseudomonas simiae WCS417 around PS417_19175

Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
4,147,724	-		PS417_19170	0.83	-0.9
4,147,747	-		PS417_19170	0.84	+0.1
4,147,747	-		PS417_19170	0.84	+0.3
4,147,763	-		PS417_19170	0.84	-0.6
4,147,763	-		PS417_19170	0.84	+0.4
4,147,796	-		PS417_19170	0.85	-1.1
4,147,807	+		PS417_19170	0.85	+1.1
4,147,807	+				+0.0
4,147,808	-		PS417_19170	0.85	+0.4
4,147,855	+		PS417_19170	0.86	-1.2
4,147,856	-		PS417_19170	0.86	+0.1
4,147,969	+		PS417_19170	0.88	-0.2
4,147,969	+		PS417_19170	0.88	-2.1
4,147,969	+		PS417_19170	0.88	-0.6
4,147,969	+		PS417_19170	0.88	-0.7
4,147,970	-		PS417_19170	0.88	+1.2
4,148,109	-				+0.1
4,148,227	+				+0.2
4,148,262	+				-1.3
4,148,386	+				+0.1
4,148,401	+				-2.4
4,148,549	+				-1.7
4,148,550	-				-1.6
4,148,691	+				+1.2
4,148,716	-				-1.4
4,148,786	+				+0.4
4,148,786	+				-1.4
4,148,825	-				-1.3
4,148,825	-				-1.2
4,148,825	-				+0.0
4,148,825	-				-0.2
4,148,827	+				+0.6
4,148,828	-				-2.6
4,148,848	+				-0.4
4,148,849	-				+0.6
4,148,849	-				+0.0
4,148,994	-				-1.4
4,148,994	-				+0.3
4,149,156	+				-0.6
4,149,157	-		PS417_19175	0.13	-0.3
4,149,166	-		PS417_19175	0.14	-0.7
4,149,273	+		PS417_19175	0.16	-0.9
4,149,273	+		PS417_19175	0.16	+0.6
4,149,373	-		PS417_19175	0.18	-1.4
4,149,440	-		PS417_19175	0.20	+1.1
4,149,741	+		PS417_19175	0.26	+0.2
4,149,742	-		PS417_19175	0.26	+0.1
4,149,768	+		PS417_19175	0.27	-0.7
4,149,769	-		PS417_19175	0.27	-1.9
4,149,769	-		PS417_19175	0.27	+0.7
4,149,792	+		PS417_19175	0.27	-0.5
4,149,819	-		PS417_19175	0.28	-0.4
4,150,057	+		PS417_19175	0.33	+1.6
4,150,113	-		PS417_19175	0.34	-1.7
4,150,126	-		PS417_19175	0.35	+0.0
4,150,175	+		PS417_19175	0.36	+0.0
4,150,271	+		PS417_19175	0.38	+1.6
4,150,271	+		PS417_19175	0.38	+0.4
4,150,272	-		PS417_19175	0.38	+0.1
4,150,273	+		PS417_19175	0.38	-1.5
4,150,273	+		PS417_19175	0.38	+0.4
4,150,274	-		PS417_19175	0.38	+0.4
4,150,384	+		PS417_19175	0.40	-1.1
4,150,384	+		PS417_19175	0.40	+1.0
4,150,385	-		PS417_19175	0.40	-0.4
4,150,385	-		PS417_19175	0.40	+1.8
4,150,385	-		PS417_19175	0.40	-0.4
4,150,385	-		PS417_19175	0.40	-0.6
4,150,385	-		PS417_19175	0.40	+0.6
4,150,385	-		PS417_19175	0.40	+0.3
4,150,698	+		PS417_19175	0.47	-1.1
4,150,698	+		PS417_19175	0.47	+0.2
4,150,698	+		PS417_19175	0.47	+0.0
4,150,774	+		PS417_19175	0.49	+4.7
4,150,775	-		PS417_19175	0.49	-0.3
4,150,866	+		PS417_19175	0.51	+0.7
4,150,866	+		PS417_19175	0.51	+0.0
4,150,867	-		PS417_19175	0.51	+1.0
4,150,869	+		PS417_19175	0.51	-1.4
4,150,869	+		PS417_19175	0.51	-0.3
4,150,869	+		PS417_19175	0.51	-0.4
4,151,082	+		PS417_19175	0.55	-0.6
4,151,239	-				+0.6
4,151,241	-		PS417_19175	0.59	-2.1
4,151,294	+		PS417_19175	0.60	+0.7
4,151,346	+		PS417_19175	0.61	+0.1
4,151,347	-		PS417_19175	0.61	-1.6
4,151,406	+		PS417_19175	0.62	+1.4
4,151,439	+		PS417_19175	0.63	+0.5
4,151,440	-				+0.0
4,151,541	+		PS417_19175	0.65	-2.5
4,151,541	+		PS417_19175	0.65	-0.4
4,151,542	-		PS417_19175	0.65	+0.6
4,151,542	-		PS417_19175	0.65	+0.1
4,151,545	-		PS417_19175	0.65	-0.9
4,151,873	-		PS417_19175	0.73	+0.1
4,151,890	+		PS417_19175	0.73	-0.4
4,151,890	+		PS417_19175	0.73	+0.6
4,152,123	+		PS417_19175	0.78	-0.1
4,152,124	-		PS417_19175	0.78	-0.1
4,152,124	-		PS417_19175	0.78	-2.0
4,152,230	+		PS417_19175	0.80	+1.7
4,152,246	+				+1.0
4,152,246	+		PS417_19175	0.81	+0.3
4,152,350	-		PS417_19175	0.83	+0.2
4,152,368	-		PS417_19175	0.83	-0.1
4,152,368	-		PS417_19175	0.83	+0.6
4,152,407	-		PS417_19175	0.84	+0.0
4,152,484	-		PS417_19175	0.86	-0.4
4,152,882	+				-0.5
4,152,882	+				+1.4
4,152,942	+				-1.6
4,152,942	+				+0.0
4,152,993	+				+1.8
4,152,994	-				-0.1
4,152,994	-				-0.2
4,152,994	-				-0.4
4,153,056	+				+0.1
4,153,056	+				-1.1
4,153,057	-				-0.8
4,153,057	-				+0.1
4,153,068	+				-0.0
4,153,069	-				+0.2
4,153,069	-				-0.4
4,153,250	-				+1.2
4,153,309	+				-1.2
4,153,309	+				+1.6
4,153,309	+				-1.6
4,153,310	-				-0.0
4,153,482	-		PS417_19180	0.11	+1.6
4,153,514	+		PS417_19180	0.12	-0.3
4,153,515	-		PS417_19180	0.12	+0.7
4,153,536	+		PS417_19180	0.13	+1.1
4,153,536	+		PS417_19180	0.13	-0.2
4,153,559	-		PS417_19180	0.13	-0.5
4,153,562	+		PS417_19180	0.13	-0.7
4,153,622	+		PS417_19180	0.16	-2.0
4,153,623	-		PS417_19180	0.16	+0.0
4,153,634	-		PS417_19180	0.16	-0.1
4,153,643	+		PS417_19180	0.16	+2.0
4,153,644	-		PS417_19180	0.16	+1.3
4,153,655	-		PS417_19180	0.17	-0.3
4,153,741	+		PS417_19180	0.20	+1.6
4,153,742	-		PS417_19180	0.20	+0.8
4,153,804	+		PS417_19180	0.22	+1.6
4,153,804	+		PS417_19180	0.22	-0.6
4,153,805	-		PS417_19180	0.22	-1.2
4,154,065	+		PS417_19180	0.32	-1.4
4,154,066	-		PS417_19180	0.32	+0.0
4,154,068	+		PS417_19180	0.32	-0.1
4,154,069	-		PS417_19180	0.32	-0.5
4,154,069	-		PS417_19180	0.32	-0.5
4,154,121	-		PS417_19180	0.34	+0.4
4,154,121	-		PS417_19180	0.34	-0.6