Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00935 and PS417_00940 are separated by 13 nucleotides PS417_00940 and PS417_00945 are separated by 3 nucleotides PS417_00945 and PS417_00950 are separated by 70 nucleotides PS417_00950 and PS417_00955 are separated by 83 nucleotides
PS417_00935: PS417_00935 - sulfate ABC transporter permease, at 209,573 to 210,391
_00935
PS417_00940: PS417_00940 - sulfate ABC transporter permease, at 210,405 to 211,277
_00940
PS417_00945: PS417_00945 - sulfate ABC transporter ATP-binding protein, at 211,281 to 212,261
_00945
PS417_00950: PS417_00950 - membrane protein, at 212,332 to 212,856
_00950
PS417_00955: PS417_00955 - Crp/Fnr family transcriptional regulator, at 212,940 to 213,626
_00955
Position (kb) 211
212
213 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 210.287 kb on + strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.288 kb on - strand, within PS417_00935 at 210.477 kb on - strand at 210.696 kb on + strand, within PS417_00940 at 210.697 kb on - strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 210.777 kb on + strand, within PS417_00940 at 211.152 kb on + strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.153 kb on - strand, within PS417_00940 at 211.242 kb on - strand at 211.242 kb on - strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.275 kb on + strand at 211.276 kb on - strand at 211.276 kb on - strand at 211.713 kb on - strand, within PS417_00945 at 211.713 kb on - strand, within PS417_00945 at 211.980 kb on + strand, within PS417_00945 at 212.452 kb on + strand, within PS417_00950 at 212.502 kb on - strand, within PS417_00950 at 212.505 kb on - strand, within PS417_00950 at 212.860 kb on + strand at 212.871 kb on + strand at 212.871 kb on + strand at 212.872 kb on - strand at 212.872 kb on - strand at 213.014 kb on + strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.015 kb on - strand, within PS417_00955 at 213.060 kb on + strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.061 kb on - strand, within PS417_00955 at 213.096 kb on + strand, within PS417_00955
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 210,287 + PS417_00935 0.87 -0.9 210,288 - PS417_00935 0.87 +0.3 210,288 - PS417_00935 0.87 -2.6 210,288 - PS417_00935 0.87 +0.1 210,477 - -1.3 210,696 + PS417_00940 0.33 -1.4 210,697 - PS417_00940 0.33 +0.6 210,777 + PS417_00940 0.43 -0.5 210,777 + PS417_00940 0.43 -0.7 211,152 + PS417_00940 0.86 -2.0 211,153 - PS417_00940 0.86 -0.4 211,153 - PS417_00940 0.86 -1.2 211,153 - PS417_00940 0.86 -0.5 211,242 - +0.6 211,242 - +0.8 211,275 + -2.3 211,275 + -0.3 211,275 + +1.4 211,276 - -0.4 211,276 - -0.3 211,713 - PS417_00945 0.44 -0.7 211,713 - PS417_00945 0.44 +1.9 211,980 + PS417_00945 0.71 +0.2 212,452 + PS417_00950 0.23 -0.3 212,502 - PS417_00950 0.32 -0.5 212,505 - PS417_00950 0.33 -0.2 212,860 + +0.5 212,871 + -0.2 212,871 + +0.6 212,872 - +0.6 212,872 - +3.9 213,014 + PS417_00955 0.11 +0.4 213,015 - PS417_00955 0.11 -0.6 213,015 - PS417_00955 0.11 -0.1 213,015 - PS417_00955 0.11 +0.8 213,015 - PS417_00955 0.11 -0.4 213,060 + PS417_00955 0.17 +0.8 213,061 - PS417_00955 0.18 -0.1 213,061 - PS417_00955 0.18 -1.2 213,061 - PS417_00955 0.18 +1.3 213,096 + PS417_00955 0.23 +1.3
Or see this region's nucleotide sequence