Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_08635 and PS417_08640 overlap by 14 nucleotides PS417_08640 and PS417_08645 are separated by 156 nucleotides PS417_08645 and PS417_08650 are separated by 74 nucleotides PS417_08650 and PS417_08655 are separated by 73 nucleotides
PS417_08635: PS417_08635 - ammonium transporter, at 1,885,611 to 1,886,819
_08635
PS417_08640: PS417_08640 - sodium:proton antiporter, at 1,886,806 to 1,888,536
_08640
PS417_08645: PS417_08645 - glutaredoxin, at 1,888,693 to 1,888,929
_08645
PS417_08650: PS417_08650 - transcriptional regulator, at 1,889,004 to 1,889,339
_08650
PS417_08655: PS417_08655 - pseudouridine synthase, at 1,889,413 to 1,890,303
_08655
Position (kb) 1886
1887
1888
1889 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1885.813 kb on + strand, within PS417_08635 at 1885.813 kb on + strand, within PS417_08635 at 1885.831 kb on - strand, within PS417_08635 at 1886.009 kb on + strand, within PS417_08635 at 1886.009 kb on + strand, within PS417_08635 at 1886.009 kb on + strand, within PS417_08635 at 1886.010 kb on - strand, within PS417_08635 at 1886.713 kb on + strand at 1886.716 kb on - strand at 1886.766 kb on + strand at 1886.766 kb on + strand at 1886.766 kb on + strand at 1886.767 kb on - strand at 1886.769 kb on + strand at 1886.852 kb on + strand at 1886.852 kb on + strand at 1887.252 kb on + strand, within PS417_08640 at 1887.253 kb on - strand, within PS417_08640 at 1887.254 kb on + strand, within PS417_08640 at 1887.254 kb on + strand, within PS417_08640 at 1887.254 kb on + strand, within PS417_08640 at 1887.254 kb on + strand, within PS417_08640 at 1887.254 kb on + strand, within PS417_08640 at 1887.255 kb on - strand, within PS417_08640 at 1887.255 kb on - strand, within PS417_08640 at 1887.255 kb on - strand, within PS417_08640 at 1887.255 kb on - strand, within PS417_08640 at 1887.255 kb on - strand, within PS417_08640 at 1887.780 kb on - strand, within PS417_08640 at 1888.448 kb on + strand at 1888.448 kb on + strand at 1888.449 kb on - strand at 1888.593 kb on - strand at 1888.594 kb on + strand at 1888.595 kb on - strand at 1888.655 kb on + strand at 1888.656 kb on - strand at 1888.668 kb on + strand at 1888.712 kb on + strand at 1888.713 kb on - strand at 1888.713 kb on - strand at 1888.715 kb on + strand at 1888.716 kb on - strand at 1888.835 kb on - strand, within PS417_08645 at 1888.955 kb on + strand at 1889.224 kb on - strand, within PS417_08650 at 1889.232 kb on + strand, within PS417_08650 at 1889.350 kb on - strand at 1889.461 kb on + strand at 1889.462 kb on - strand at 1889.462 kb on - strand at 1889.462 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 1,885,813 + PS417_08635 0.17 +2.6 1,885,813 + PS417_08635 0.17 +0.0 1,885,831 - PS417_08635 0.18 -0.0 1,886,009 + PS417_08635 0.33 +0.6 1,886,009 + PS417_08635 0.33 +0.8 1,886,009 + PS417_08635 0.33 +1.7 1,886,010 - PS417_08635 0.33 -1.2 1,886,713 + -2.3 1,886,716 - +0.7 1,886,766 + -1.4 1,886,766 + +0.3 1,886,766 + -0.4 1,886,767 - -0.1 1,886,769 + -0.1 1,886,852 + -0.4 1,886,852 + -2.0 1,887,252 + PS417_08640 0.26 -1.4 1,887,253 - PS417_08640 0.26 +0.6 1,887,254 + PS417_08640 0.26 -0.9 1,887,254 + PS417_08640 0.26 -0.9 1,887,254 + PS417_08640 0.26 -1.2 1,887,254 + PS417_08640 0.26 -0.6 1,887,254 + PS417_08640 0.26 -0.4 1,887,255 - PS417_08640 0.26 -2.2 1,887,255 - PS417_08640 0.26 -0.2 1,887,255 - PS417_08640 0.26 +1.4 1,887,255 - PS417_08640 0.26 -0.9 1,887,255 - PS417_08640 0.26 -0.2 1,887,780 - PS417_08640 0.56 +2.1 1,888,448 + -1.1 1,888,448 + +1.6 1,888,449 - -0.3 1,888,593 - +0.8 1,888,594 + -1.8 1,888,595 - -2.0 1,888,655 + -0.4 1,888,656 - +0.8 1,888,668 + -0.0 1,888,712 + -1.6 1,888,713 - +0.6 1,888,713 - -0.9 1,888,715 + -1.4 1,888,716 - -0.9 1,888,835 - PS417_08645 0.60 -0.2 1,888,955 + -0.7 1,889,224 - PS417_08650 0.65 -0.8 1,889,232 + PS417_08650 0.68 +0.4 1,889,350 - +0.9 1,889,461 + +1.6 1,889,462 - -0.0 1,889,462 - +0.8 1,889,462 - -0.6
Or see this region's nucleotide sequence