Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00830 and PS417_00835 are separated by 483 nucleotides PS417_00835 and PS417_00840 are separated by 419 nucleotides
PS417_00830: PS417_00830 - hypothetical protein, at 183,570 to 184,313
_00830
PS417_00835: PS417_00835 - hypothetical protein, at 184,797 to 185,834
_00835
PS417_00840: PS417_00840 - hypothetical protein, at 186,254 to 190,063
_00840
Position (kb) 184
185
186 Strain fitness (log2 ratio) -1
0
1
2
3 at 184.121 kb on - strand, within PS417_00830 at 184.121 kb on - strand, within PS417_00830 at 184.261 kb on - strand at 184.261 kb on - strand at 184.355 kb on + strand at 184.355 kb on + strand at 184.356 kb on - strand at 184.359 kb on + strand at 184.382 kb on - strand at 184.501 kb on + strand at 184.570 kb on - strand at 184.625 kb on - strand at 184.626 kb on + strand at 184.669 kb on + strand at 184.725 kb on + strand at 185.102 kb on + strand, within PS417_00835 at 185.158 kb on - strand, within PS417_00835 at 185.425 kb on - strand, within PS417_00835 at 185.466 kb on + strand, within PS417_00835 at 185.667 kb on - strand, within PS417_00835 at 185.667 kb on - strand, within PS417_00835 at 185.670 kb on + strand, within PS417_00835 at 185.721 kb on - strand, within PS417_00835 at 185.845 kb on + strand at 185.978 kb on + strand at 185.978 kb on + strand at 185.978 kb on + strand at 185.979 kb on - strand at 186.056 kb on + strand at 186.117 kb on + strand at 186.118 kb on - strand at 186.121 kb on + strand at 186.136 kb on - strand at 186.186 kb on - strand at 186.186 kb on - strand at 186.211 kb on - strand at 186.222 kb on - strand at 186.240 kb on - strand at 186.321 kb on + strand at 186.394 kb on + strand at 186.394 kb on + strand at 186.395 kb on - strand at 186.395 kb on - strand at 186.395 kb on - strand at 186.483 kb on + strand at 186.483 kb on + strand at 186.483 kb on + strand at 186.484 kb on - strand at 186.484 kb on - strand at 186.487 kb on + strand at 186.488 kb on - strand at 186.488 kb on - strand at 186.488 kb on - strand at 186.509 kb on - strand at 186.525 kb on - strand at 186.525 kb on - strand at 186.525 kb on - strand at 186.579 kb on + strand at 186.579 kb on + strand at 186.579 kb on + strand at 186.579 kb on + strand at 186.651 kb on + strand, within PS417_00840 at 186.687 kb on + strand, within PS417_00840 at 186.687 kb on + strand, within PS417_00840 at 186.688 kb on - strand, within PS417_00840 at 186.688 kb on - strand, within PS417_00840 at 186.760 kb on + strand, within PS417_00840 at 186.761 kb on - strand, within PS417_00840 at 186.763 kb on - strand, within PS417_00840 at 186.826 kb on + strand, within PS417_00840
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 184,121 - PS417_00830 0.74 +0.5 184,121 - PS417_00830 0.74 +0.8 184,261 - +1.6 184,261 - +0.8 184,355 + -0.4 184,355 + +3.5 184,356 - +1.0 184,359 + -1.0 184,382 - -1.2 184,501 + +0.1 184,570 - +0.6 184,625 - -1.3 184,626 + +0.9 184,669 + -0.1 184,725 + +1.0 185,102 + PS417_00835 0.29 +0.7 185,158 - PS417_00835 0.35 +0.5 185,425 - PS417_00835 0.61 +0.0 185,466 + PS417_00835 0.64 -0.8 185,667 - PS417_00835 0.84 +0.0 185,667 - PS417_00835 0.84 -0.9 185,670 + PS417_00835 0.84 +0.2 185,721 - PS417_00835 0.89 -0.1 185,845 + +0.4 185,978 + -0.0 185,978 + +0.6 185,978 + +0.6 185,979 - -0.5 186,056 + +0.1 186,117 + -0.7 186,118 - -0.4 186,121 + -0.2 186,136 - -0.1 186,186 - +0.2 186,186 - -0.4 186,211 - +0.4 186,222 - -0.4 186,240 - -0.5 186,321 + -0.1 186,394 + -1.5 186,394 + +3.2 186,395 - +0.8 186,395 - +0.0 186,395 - -1.0 186,483 + -1.5 186,483 + -0.1 186,483 + -0.4 186,484 - -0.8 186,484 - -0.5 186,487 + +2.4 186,488 - +0.1 186,488 - +1.6 186,488 - -1.2 186,509 - +3.5 186,525 - +0.3 186,525 - -1.2 186,525 - +2.2 186,579 + +0.2 186,579 + -0.6 186,579 + -1.0 186,579 + -0.0 186,651 + PS417_00840 0.10 -0.0 186,687 + PS417_00840 0.11 -0.3 186,687 + PS417_00840 0.11 +0.7 186,688 - PS417_00840 0.11 -0.4 186,688 - PS417_00840 0.11 -0.6 186,760 + PS417_00840 0.13 -1.2 186,761 - PS417_00840 0.13 -1.6 186,763 - PS417_00840 0.13 +0.3 186,826 + PS417_00840 0.15 -1.5
Or see this region's nucleotide sequence