Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00710 and PS417_00715 overlap by 4 nucleotides PS417_00715 and PS417_00720 overlap by 4 nucleotides PS417_00720 and PS417_00725 overlap by 4 nucleotides
PS417_00710: PS417_00710 - fusaric acid resistance protein, at 147,520 to 149,598
_00710
PS417_00715: PS417_00715 - required for octanoate transport, together with NodT, MFP, and FUSC proteins (PS417_00725, PS417_00720, PS417_00710) <small>(from data)</small>, at 149,595 to 149,804
_00715
PS417_00720: PS417_00720 - membrane protein, at 149,801 to 150,691
_00720
PS417_00725: PS417_00725 - RND transporter, at 150,688 to 152,130
_00725
Position (kb) 149
150
151 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 148.823 kb on - strand, within PS417_00710 at 149.300 kb on - strand, within PS417_00710 at 149.595 kb on - strand at 149.657 kb on + strand, within PS417_00715 at 149.657 kb on + strand, within PS417_00715 at 149.657 kb on + strand, within PS417_00715 at 149.658 kb on - strand, within PS417_00715 at 149.658 kb on - strand at 149.658 kb on - strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.661 kb on + strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.662 kb on - strand, within PS417_00715 at 149.709 kb on + strand, within PS417_00715 at 149.891 kb on + strand, within PS417_00720 at 149.891 kb on + strand, within PS417_00720 at 149.891 kb on + strand at 149.891 kb on + strand, within PS417_00720 at 149.891 kb on + strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.892 kb on - strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 149.894 kb on + strand, within PS417_00720 at 150.670 kb on + strand at 150.757 kb on + strand at 150.772 kb on - strand at 150.830 kb on + strand at 150.830 kb on + strand at 150.831 kb on - strand at 150.831 kb on - strand at 150.868 kb on + strand, within PS417_00725 at 150.868 kb on + strand, within PS417_00725 at 150.868 kb on + strand, within PS417_00725 at 150.869 kb on - strand, within PS417_00725 at 150.961 kb on + strand, within PS417_00725 at 151.375 kb on + strand, within PS417_00725 at 151.376 kb on - strand, within PS417_00725 at 151.376 kb on - strand, within PS417_00725 at 151.376 kb on - strand, within PS417_00725
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 148,823 - PS417_00710 0.63 +0.0 149,300 - PS417_00710 0.86 +0.5 149,595 - +0.1 149,657 + PS417_00715 0.30 -1.2 149,657 + PS417_00715 0.30 -1.0 149,657 + PS417_00715 0.30 +0.6 149,658 - PS417_00715 0.30 -0.4 149,658 - +0.6 149,658 - PS417_00715 0.30 -0.7 149,661 + PS417_00715 0.31 -0.7 149,661 + PS417_00715 0.31 -2.0 149,661 + PS417_00715 0.31 +1.3 149,661 + PS417_00715 0.31 +0.0 149,662 - PS417_00715 0.32 -1.2 149,662 - PS417_00715 0.32 +0.9 149,662 - PS417_00715 0.32 +1.0 149,662 - PS417_00715 0.32 -0.6 149,662 - PS417_00715 0.32 +0.0 149,662 - PS417_00715 0.32 +0.3 149,662 - PS417_00715 0.32 +1.1 149,662 - PS417_00715 0.32 +0.4 149,709 + PS417_00715 0.54 +0.5 149,891 + PS417_00720 0.10 -0.2 149,891 + PS417_00720 0.10 +4.8 149,891 + +1.6 149,891 + PS417_00720 0.10 -0.2 149,891 + PS417_00720 0.10 +1.6 149,892 - PS417_00720 0.10 +0.0 149,892 - PS417_00720 0.10 +0.6 149,892 - PS417_00720 0.10 -0.5 149,892 - PS417_00720 0.10 +0.1 149,894 + PS417_00720 0.10 +1.0 149,894 + PS417_00720 0.10 +1.6 149,894 + PS417_00720 0.10 -1.2 149,894 + PS417_00720 0.10 -1.0 149,894 + PS417_00720 0.10 -0.1 150,670 + +1.2 150,757 + -2.2 150,772 - +0.2 150,830 + +1.2 150,830 + +1.7 150,831 - -0.5 150,831 - +1.6 150,868 + PS417_00725 0.12 +1.5 150,868 + PS417_00725 0.12 -0.2 150,868 + PS417_00725 0.12 -0.4 150,869 - PS417_00725 0.13 -0.4 150,961 + PS417_00725 0.19 +1.8 151,375 + PS417_00725 0.48 -0.1 151,376 - PS417_00725 0.48 +2.8 151,376 - PS417_00725 0.48 +1.2 151,376 - PS417_00725 0.48 -1.1
Or see this region's nucleotide sequence