Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04090 and PS417_04095 are separated by 205 nucleotides PS417_04095 and PS417_04100 overlap by 8 nucleotides PS417_04100 and PS417_04105 are separated by 111 nucleotides
PS417_04090: PS417_04090 - hypothetical protein, at 919,950 to 920,663
_04090
PS417_04095: PS417_04095 - histidine kinase, at 920,869 to 922,131
_04095
PS417_04100: PS417_04100 - chemotaxis protein CheY, at 922,124 to 922,684
_04100
PS417_04105: PS417_04105 - ABC transporter ATP-binding protein, at 922,796 to 924,520
_04105
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.883 kb on + strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.884 kb on - strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.887 kb on + strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 919.888 kb on - strand at 920.075 kb on - strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.122 kb on + strand, within PS417_04090 at 920.213 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.572 kb on + strand, within PS417_04090 at 920.573 kb on - strand, within PS417_04090 at 920.679 kb on + strand at 920.700 kb on + strand at 920.701 kb on - strand at 920.826 kb on + strand at 921.184 kb on + strand, within PS417_04095 at 921.268 kb on + strand, within PS417_04095 at 922.749 kb on - strand at 922.749 kb on - strand at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.982 kb on + strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 922.983 kb on - strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105 at 923.096 kb on + strand, within PS417_04105
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 919,883 + +1.0 919,883 + +0.2 919,883 + +0.4 919,883 + -0.2 919,883 + +1.5 919,883 + +0.5 919,884 - -0.3 919,884 - -1.9 919,884 - +0.2 919,884 - -1.2 919,884 - -2.6 919,884 - -1.0 919,887 + +1.5 919,887 + +1.3 919,887 + -1.4 919,887 + -0.6 919,887 + -0.1 919,888 - +0.3 919,888 - -0.5 919,888 - +0.5 919,888 - -1.3 919,888 - -0.9 919,888 - +1.5 920,075 - PS417_04090 0.18 -1.6 920,122 + PS417_04090 0.24 -0.7 920,122 + PS417_04090 0.24 +0.4 920,213 + PS417_04090 0.37 -0.9 920,572 + PS417_04090 0.87 -0.3 920,572 + PS417_04090 0.87 +0.7 920,573 - PS417_04090 0.87 -0.5 920,679 + +0.4 920,700 + -0.8 920,701 - +1.7 920,826 + -0.8 921,184 + PS417_04095 0.25 +1.5 921,268 + PS417_04095 0.32 +0.5 922,749 - -0.0 922,749 - +3.1 922,982 + PS417_04105 0.11 -0.8 922,982 + PS417_04105 0.11 -0.5 922,982 + PS417_04105 0.11 -0.6 922,983 - PS417_04105 0.11 -0.7 922,983 - PS417_04105 0.11 -0.0 922,983 - PS417_04105 0.11 -1.0 923,096 + PS417_04105 0.17 -0.6 923,096 + PS417_04105 0.17 -1.5
Or see this region's nucleotide sequence