Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03900 and PS417_03905 are separated by 199 nucleotides PS417_03905 and PS417_03910 are separated by 35 nucleotides
PS417_03900: PS417_03900 - type II secretion system protein F, at 872,310 to 873,518
_03900
PS417_03905: PS417_03905 - fimbrial protein, at 873,718 to 874,134
_03905
PS417_03910: PS417_03910 - pilus assembly protein, at 874,170 to 875,570
_03910
Position (kb) 873
874
875 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 873.010 kb on + strand, within PS417_03900 at 873.011 kb on - strand, within PS417_03900 at 873.039 kb on + strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.131 kb on - strand, within PS417_03900 at 873.281 kb on + strand, within PS417_03900 at 873.553 kb on + strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.554 kb on - strand at 873.558 kb on + strand at 873.559 kb on - strand at 873.648 kb on - strand at 873.663 kb on + strand at 873.701 kb on + strand at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 873.806 kb on - strand, within PS417_03905 at 874.099 kb on + strand at 874.099 kb on + strand at 874.139 kb on + strand at 874.569 kb on + strand, within PS417_03910 at 874.569 kb on + strand, within PS417_03910 at 874.570 kb on - strand, within PS417_03910 at 874.576 kb on - strand, within PS417_03910 at 874.576 kb on - strand, within PS417_03910 at 874.749 kb on - strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.922 kb on + strand, within PS417_03910 at 874.923 kb on - strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.027 kb on + strand, within PS417_03910 at 875.028 kb on - strand, within PS417_03910 at 875.028 kb on - strand at 875.090 kb on + strand, within PS417_03910 at 875.090 kb on + strand, within PS417_03910 at 875.091 kb on - strand, within PS417_03910
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 873,010 + PS417_03900 0.58 +0.5 873,011 - PS417_03900 0.58 -0.6 873,039 + PS417_03900 0.60 +1.0 873,131 - PS417_03900 0.68 -1.2 873,131 - PS417_03900 0.68 +1.5 873,281 + PS417_03900 0.80 -0.2 873,553 + -0.0 873,554 - +0.4 873,554 - -0.6 873,554 - +0.5 873,554 - -0.8 873,554 - +0.5 873,558 + +0.5 873,559 - -0.5 873,648 - -0.6 873,663 + -0.6 873,701 + +0.7 873,806 - PS417_03905 0.21 +0.4 873,806 - PS417_03905 0.21 -2.0 873,806 - PS417_03905 0.21 -1.3 873,806 - PS417_03905 0.21 -0.3 873,806 - PS417_03905 0.21 +3.5 874,099 + +1.5 874,099 + -0.0 874,139 + -0.4 874,569 + PS417_03910 0.28 +0.1 874,569 + PS417_03910 0.28 +2.1 874,570 - PS417_03910 0.29 +1.0 874,576 - PS417_03910 0.29 +0.1 874,576 - PS417_03910 0.29 +0.7 874,749 - PS417_03910 0.41 +0.2 874,922 + PS417_03910 0.54 -1.5 874,922 + PS417_03910 0.54 -0.0 874,922 + PS417_03910 0.54 +0.5 874,923 - PS417_03910 0.54 +0.4 875,027 + PS417_03910 0.61 -1.5 875,027 + PS417_03910 0.61 +0.2 875,027 + PS417_03910 0.61 +1.0 875,027 + PS417_03910 0.61 +0.9 875,028 - PS417_03910 0.61 -0.6 875,028 - +1.5 875,090 + PS417_03910 0.66 +0.8 875,090 + PS417_03910 0.66 -1.5 875,091 - PS417_03910 0.66 +1.2
Or see this region's nucleotide sequence