Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03380 and PS417_03385 are separated by 31 nucleotides PS417_03385 and PS417_03390 are separated by 174 nucleotides PS417_03390 and PS417_03395 are separated by 141 nucleotides PS417_03395 and PS417_03400 are separated by 44 nucleotides
PS417_03380: PS417_03380 - hypothetical protein, at 777,107 to 777,544
_03380
PS417_03385: PS417_03385 - flavin reductase, at 777,576 to 778,163
_03385
PS417_03390: PS417_03390 - AraC family transcriptional regulator, at 778,338 to 779,159
_03390
PS417_03395: PS417_03395 - lysine transporter LysE, at 779,301 to 779,939
_03395
PS417_03400: PS417_03400 - D-alanine--D-alanine ligase, at 779,984 to 781,078
_03400
Position (kb) 778
779
780 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 777.454 kb on - strand, within PS417_03380 at 777.542 kb on + strand at 777.988 kb on - strand, within PS417_03385 at 777.988 kb on - strand, within PS417_03385 at 778.393 kb on + strand at 778.394 kb on - strand at 778.519 kb on + strand, within PS417_03390 at 778.520 kb on - strand, within PS417_03390 at 778.666 kb on + strand, within PS417_03390 at 778.667 kb on - strand, within PS417_03390 at 778.667 kb on - strand, within PS417_03390 at 778.888 kb on + strand, within PS417_03390 at 778.889 kb on - strand, within PS417_03390 at 778.889 kb on - strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.041 kb on + strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.042 kb on - strand, within PS417_03390 at 779.189 kb on + strand at 779.189 kb on + strand at 779.190 kb on - strand at 779.190 kb on - strand at 779.231 kb on + strand at 779.259 kb on + strand at 779.259 kb on + strand at 779.514 kb on - strand, within PS417_03395 at 779.532 kb on + strand, within PS417_03395 at 779.532 kb on + strand, within PS417_03395 at 779.533 kb on - strand, within PS417_03395 at 779.533 kb on - strand, within PS417_03395 at 779.562 kb on + strand, within PS417_03395 at 779.562 kb on + strand, within PS417_03395 at 779.563 kb on - strand, within PS417_03395 at 779.571 kb on + strand, within PS417_03395 at 779.587 kb on + strand, within PS417_03395 at 779.587 kb on + strand, within PS417_03395 at 779.902 kb on - strand at 779.960 kb on + strand at 779.961 kb on - strand at 779.961 kb on - strand at 780.000 kb on + strand at 780.007 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 777,454 - PS417_03380 0.79 +0.8 777,542 + -1.2 777,988 - PS417_03385 0.70 -1.2 777,988 - PS417_03385 0.70 -0.2 778,393 + +0.5 778,394 - +1.9 778,519 + PS417_03390 0.22 +0.2 778,520 - PS417_03390 0.22 -0.0 778,666 + PS417_03390 0.40 -0.1 778,667 - PS417_03390 0.40 +1.2 778,667 - PS417_03390 0.40 -0.9 778,888 + PS417_03390 0.67 +2.0 778,889 - PS417_03390 0.67 +0.5 778,889 - PS417_03390 0.67 -1.1 779,041 + PS417_03390 0.86 +1.7 779,041 + PS417_03390 0.86 -0.3 779,041 + PS417_03390 0.86 +0.5 779,042 - PS417_03390 0.86 +0.0 779,042 - PS417_03390 0.86 -1.9 779,042 - PS417_03390 0.86 +0.4 779,189 + +0.1 779,189 + +1.0 779,190 - +0.5 779,190 - +0.8 779,231 + -0.4 779,259 + +2.0 779,259 + +0.1 779,514 - PS417_03395 0.33 -0.6 779,532 + PS417_03395 0.36 +0.3 779,532 + PS417_03395 0.36 -0.6 779,533 - PS417_03395 0.36 -0.5 779,533 - PS417_03395 0.36 -0.1 779,562 + PS417_03395 0.41 -0.4 779,562 + PS417_03395 0.41 -0.8 779,563 - PS417_03395 0.41 +0.4 779,571 + PS417_03395 0.42 -2.9 779,587 + PS417_03395 0.45 -0.3 779,587 + PS417_03395 0.45 -1.5 779,902 - +0.3 779,960 + -0.4 779,961 - +1.0 779,961 - -1.3 780,000 + -0.9 780,007 + -0.0
Or see this region's nucleotide sequence