Experiment: Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27200 and PS417_27205 are separated by 158 nucleotides PS417_27205 and PS417_27210 are separated by 104 nucleotides PS417_27210 and PS417_27215 are separated by 127 nucleotides
PS417_27200: PS417_27200 - acetylornithine deacetylase, at 5,872,491 to 5,873,639
_27200
PS417_27205: PS417_27205 - adenylate cyclase, at 5,873,798 to 5,875,165
_27205
PS417_27210: PS417_27210 - AsnC family transcriptional regulator, at 5,875,270 to 5,875,740
_27210
PS417_27215: PS417_27215 - hypothetical protein, at 5,875,868 to 5,876,206
_27215
Position (kb) 5873
5874
5875
5876 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 5872.995 kb on + strand, within PS417_27200 at 5872.995 kb on + strand, within PS417_27200 at 5872.996 kb on - strand, within PS417_27200 at 5873.395 kb on + strand, within PS417_27200 at 5873.412 kb on - strand, within PS417_27200 at 5873.675 kb on + strand at 5873.676 kb on - strand at 5873.697 kb on + strand at 5873.733 kb on - strand at 5873.733 kb on - strand at 5873.733 kb on - strand at 5873.733 kb on - strand at 5873.791 kb on - strand at 5874.053 kb on + strand, within PS417_27205 at 5874.219 kb on + strand, within PS417_27205 at 5874.219 kb on + strand, within PS417_27205 at 5874.423 kb on - strand, within PS417_27205 at 5874.423 kb on - strand, within PS417_27205 at 5875.037 kb on + strand at 5875.037 kb on + strand at 5875.127 kb on + strand at 5875.128 kb on - strand at 5875.219 kb on + strand at 5875.219 kb on + strand at 5875.220 kb on - strand at 5875.382 kb on + strand, within PS417_27210 at 5875.382 kb on + strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.383 kb on - strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand, within PS417_27210 at 5875.442 kb on + strand at 5875.442 kb on + strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.443 kb on - strand, within PS417_27210 at 5875.742 kb on + strand at 5875.808 kb on - strand at 5875.889 kb on + strand at 5875.998 kb on - strand, within PS417_27215 at 5876.152 kb on + strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215 at 5876.153 kb on - strand, within PS417_27215
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=sand_vermiculite_perlite_mix; Collection=16h_outgrowth_LB; Time=7_days remove 5,872,995 + PS417_27200 0.44 +1.3 5,872,995 + PS417_27200 0.44 +0.0 5,872,996 - PS417_27200 0.44 -0.4 5,873,395 + PS417_27200 0.79 +1.6 5,873,412 - PS417_27200 0.80 -0.7 5,873,675 + -1.7 5,873,676 - +0.6 5,873,697 + +1.6 5,873,733 - -0.8 5,873,733 - +7.0 5,873,733 - -1.4 5,873,733 - -0.0 5,873,791 - -0.5 5,874,053 + PS417_27205 0.19 -0.4 5,874,219 + PS417_27205 0.31 +1.2 5,874,219 + PS417_27205 0.31 +1.6 5,874,423 - PS417_27205 0.46 +0.3 5,874,423 - PS417_27205 0.46 +0.5 5,875,037 + -0.1 5,875,037 + -1.3 5,875,127 + -0.1 5,875,128 - +2.9 5,875,219 + -0.4 5,875,219 + -0.3 5,875,220 - +0.0 5,875,382 + PS417_27210 0.24 -1.4 5,875,382 + PS417_27210 0.24 -0.5 5,875,383 - PS417_27210 0.24 +0.4 5,875,383 - PS417_27210 0.24 +2.2 5,875,442 + PS417_27210 0.37 -0.3 5,875,442 + PS417_27210 0.37 -0.7 5,875,442 + +0.0 5,875,442 + PS417_27210 0.37 +0.0 5,875,443 - PS417_27210 0.37 +0.4 5,875,443 - PS417_27210 0.37 -0.4 5,875,742 + -1.2 5,875,808 - -0.5 5,875,889 + -0.9 5,875,998 - PS417_27215 0.38 -0.1 5,876,152 + PS417_27215 0.84 +1.7 5,876,153 - PS417_27215 0.84 -1.0 5,876,153 - PS417_27215 0.84 +0.0
Or see this region's nucleotide sequence